Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312H05f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    22   4.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.7  

>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 367 KNLSEEEKLPFIKEADKLRTQHKKQHPDYKYQPRRRKPPLA 489
           KN S EEK P    + +   + K++  + +Y   RR+  L+
Sbjct: 14  KNGSPEEKRPRTAFSAEQLARLKREFAENRYLTERRRQQLS 54


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/35 (22%), Positives = 17/35 (48%)
 Frame = +1

Query: 370 NLSEEEKLPFIKEADKLRTQHKKQHPDYKYQPRRR 474
           N S     P +++ +   +  + QH +   QPR++
Sbjct: 364 NSSNFAMKPLVRQPEDTMSVDRMQHCELHMQPRKK 398


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/35 (22%), Positives = 17/35 (48%)
 Frame = +1

Query: 370 NLSEEEKLPFIKEADKLRTQHKKQHPDYKYQPRRR 474
           N S     P +++ +   +  + QH +   QPR++
Sbjct: 364 NSSNFAMKPLVRQPEDTMSVDRMQHCELHMQPRKK 398


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,804
Number of Sequences: 438
Number of extensions: 3014
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)