Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312H05f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20696.1 68414.m02593 high mobility group protein beta2 (HMGb... 56 1e-08
At1g20693.1 68414.m02592 high mobility group protein beta1 (HMGb... 55 3e-08
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro... 53 1e-07
At3g28730.1 68416.m03587 structure-specific recognition protein ... 52 3e-07
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 50 1e-06
At2g17560.1 68415.m02032 high mobility group protein gamma (HMGg... 50 1e-06
At5g23420.1 68418.m02747 high mobility group (HMG1/2) family pro... 46 2e-05
At4g35570.1 68417.m05054 high mobility group protein delta (HMGd... 42 3e-04
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 41 4e-04
At1g04880.1 68414.m00485 high mobility group (HMG1/2) family pro... 37 0.009
At3g13350.1 68416.m01680 high mobility group (HMG1/2) family pro... 31 0.47
At1g55650.1 68414.m06370 high mobility group (HMG1/2) family pro... 31 0.47
At4g08810.1 68417.m01450 expressed protein 30 0.82
At2g36400.1 68415.m04467 expressed protein nearly identical to t... 30 0.82
At2g18876.1 68415.m02201 expressed protein 29 1.4
At1g59760.1 68414.m06729 ATP-dependent RNA helicase, putative si... 29 1.4
At5g54370.1 68418.m06770 late embryogenesis abundant protein-rel... 29 1.9
At1g76110.1 68414.m08838 high mobility group (HMG1/2) family pro... 29 1.9
At5g05330.1 68418.m00574 hypothetical protein 29 2.5
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 28 3.3
At3g52180.1 68416.m05729 protein tyrosine phosphatase/kinase int... 28 3.3
At1g48090.2 68414.m05363 C2 domain-containing protein contains P... 27 5.8
At1g48090.1 68414.m05362 C2 domain-containing protein contains P... 27 5.8
At1g26820.1 68414.m03268 ribonuclease 3 (RNS3) identical to ribo... 27 5.8
At5g23405.2 68418.m02742 high mobility group (HMG1/2) family pro... 27 7.7
At5g23405.1 68418.m02741 high mobility group (HMG1/2) family pro... 27 7.7
At4g31780.2 68417.m04510 1,2-diacylglycerol 3-beta-galactosyltra... 27 7.7
At4g31780.1 68417.m04509 1,2-diacylglycerol 3-beta-galactosyltra... 27 7.7
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 27 7.7
>At1g20696.1 68414.m02593 high mobility group protein beta2
(HMGbeta2) / HMG protein beta2 nearly identical to HMG
protein (HMGbeta2) [Arabidopsis thaliana] GI:2832361
Length = 141
Score = 56.4 bits (130), Expect = 1e-08
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Frame = +1
Query: 199 TILPQPTKGG-GCMRRPHV-KRPMNAFMVFAQAMRRRLSAERPSLHN-AELSKSLGSMWK 369
++ +P KG G + P+ KRP +AF VF + R E P + A + K+ G WK
Sbjct: 16 SVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWK 75
Query: 370 NLSEEEKLPFIKEADKLRTQHKKQHPDY 453
+LS+ EK P++ +ADK + +++K Y
Sbjct: 76 SLSDSEKAPYVAKADKRKVEYEKNMKAY 103
>At1g20693.1 68414.m02592 high mobility group protein beta1
(HMGbeta1) / HMG protein beta1 nearly identical to HMG
protein (HMGbeta1) [Arabidopsis thaliana] GI:2832359
Length = 144
Score = 54.8 bits (126), Expect = 3e-08
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Frame = +1
Query: 199 TILPQPTKGGG----CMRRPHV-KRPMNAFMVFAQAMRRRLSAERPSLHN-AELSKSLGS 360
++ +P KG G + P+ KRP +AF VF + R E P + A + K+ G
Sbjct: 16 SVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGD 75
Query: 361 MWKNLSEEEKLPFIKEADKLRTQHKKQHPDY 453
WK+LS+ EK P++ +A+K + +++K Y
Sbjct: 76 KWKSLSDSEKAPYVAKAEKRKVEYEKNIKAY 106
>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family
protein similar to HMG2B [Homo sapiens] GI:32335;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 456
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/67 (35%), Positives = 42/67 (62%)
Frame = +1
Query: 253 KRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQH 432
K+P +++ +F++ R++L+ ERP +NA ++ + WK LSEEEK + +A KL +
Sbjct: 380 KKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEKQVYNGKAAKLMEAY 439
Query: 433 KKQHPDY 453
KK+ Y
Sbjct: 440 KKEVEAY 446
Score = 49.6 bits (113), Expect = 1e-06
Identities = 25/68 (36%), Positives = 40/68 (58%)
Frame = +1
Query: 253 KRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQH 432
K P++AF+V+A R L E S+ E++K G WKNLS+++K P+ K A K + +
Sbjct: 256 KHPVSAFLVYANERRAALREENKSV--VEVAKITGEEWKNLSDKKKAPYEKVAKKNKETY 313
Query: 433 KKQHPDYK 456
+ +YK
Sbjct: 314 LQAMEEYK 321
Score = 41.1 bits (92), Expect = 4e-04
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +1
Query: 244 PHVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPF 399
P KRP ++++++ + + E P E S LG+ WK+LS E+K P+
Sbjct: 136 PETKRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSLSAEDKKPY 187
>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
high mobility group protein / HMG protein nearly
identical to SP|Q05153 Structure-specific recognition
protein 1 homolog (HMG protein) {Arabidopsis thaliana};
contains Pfam profile PF00505: HMG (high mobility group)
box; contains Pfam profile PF03531: Structure-specific
recognition protein
Length = 646
Score = 51.6 bits (118), Expect = 3e-07
Identities = 23/68 (33%), Positives = 38/68 (55%)
Frame = +1
Query: 253 KRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQH 432
KR M+ FM F+Q R + E P + E+ K LG W+ +S ++K P+ +A + ++
Sbjct: 563 KRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEAKAQVDKQRY 622
Query: 433 KKQHPDYK 456
K + DYK
Sbjct: 623 KDEISDYK 630
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 49.6 bits (113), Expect = 1e-06
Identities = 24/68 (35%), Positives = 41/68 (60%)
Frame = +1
Query: 253 KRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQH 432
K+P++A++++A R L E S+ E++K G WKNLSEE+K P+ + A K + +
Sbjct: 247 KQPISAYLIYANERRAALKGENKSV--IEVAKMAGEEWKNLSEEKKAPYDQMAKKNKEIY 304
Query: 433 KKQHPDYK 456
++ YK
Sbjct: 305 LQEMEGYK 312
Score = 44.8 bits (101), Expect = 4e-05
Identities = 18/67 (26%), Positives = 38/67 (56%)
Frame = +1
Query: 253 KRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQH 432
K+P +++ +F + R+ + E P ++N+ ++ + W L EEEK + +A +L +
Sbjct: 373 KKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMELGEEEKQVYNSKAAELMEAY 432
Query: 433 KKQHPDY 453
KK+ +Y
Sbjct: 433 KKEVEEY 439
Score = 36.3 bits (80), Expect = 0.012
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 253 KRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIK--EADK 417
KRP ++++ + + + P E S LG+ WK +S EEK P+ + +ADK
Sbjct: 130 KRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGISAEEKKPYEEKYQADK 186
>At2g17560.1 68415.m02032 high mobility group protein gamma
(HMGgamma) / HMG protein gamma nearly identical to HMG
protein (HMGgamma) [Arabidopsis thaliana] GI:2832355
Length = 138
Score = 49.6 bits (113), Expect = 1e-06
Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +1
Query: 253 KRPMNAFMVFAQAMRRRLSAERPSLHN-AELSKSLGSMWKNLSEEEKLPFIKEADKLRTQ 429
KRP +AF VF + R+ + P+ + A + K+ G+ WK +++E+K P++ +A+ +T+
Sbjct: 36 KRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTE 95
Query: 430 HKKQHPDY 453
+ K Y
Sbjct: 96 YIKNVQQY 103
>At5g23420.1 68418.m02747 high mobility group (HMG1/2) family
protein similar to high mobility group protein 2 HMG2
[Ipomoea nil] GI:1052956; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 241
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/62 (32%), Positives = 35/62 (56%)
Frame = +1
Query: 253 KRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQH 432
KRP+ AF +F R+ +E + +K G WK+L+EEEK ++ +A +L+ ++
Sbjct: 116 KRPLTAFFIFMSDFRKTFKSEHNGSLAKDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEY 175
Query: 433 KK 438
K
Sbjct: 176 NK 177
>At4g35570.1 68417.m05054 high mobility group protein delta
(HMGdelta) / HMG protein delta identical to HMG protein
(HMGdelta) [Arabidopsis thaliana] GI:2832363
Length = 125
Score = 41.9 bits (94), Expect = 3e-04
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +1
Query: 253 KRPMNAFMVFAQAMRRRLSAERPSLHNA-ELSKSLGSMWKNLSEEEKLPFIKEADKLRTQ 429
K+P + F VF R+ + P + + ++ G WK ++EEE+ PF+ ++ +T+
Sbjct: 35 KKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKSQSKKTE 94
Query: 430 HKKQHPDYKYQ 462
+ Y +
Sbjct: 95 YAVTMQQYNME 105
>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
protein similar to HMG protein [Arabidopsis thaliana]
GI:2832361; contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 151
Score = 41.1 bits (92), Expect = 4e-04
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 253 KRPMNAFMVFAQAMRRRLSAERPSLHNA-ELSKSLGSMWKNLSEEEKLPFIKEADKLRTQ 429
K+P AF F R++ E P + + E+ K+ G WK ++ EEK+ + A + R +
Sbjct: 64 KKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIATEKREE 123
Query: 430 HKKQHPDY 453
+ +Y
Sbjct: 124 FHRAMTEY 131
>At1g04880.1 68414.m00485 high mobility group (HMG1/2) family
protein / ARID/BRIGHT DNA-binding domain-containing
protein low similarity to SP|O15347|HMG4_HUMAN High
mobility group protein 4 (HMG-4) (High mobility group
protein 2a) (HMG-2a) {Homo sapiens}; contains Pfam
profiles PF00505: HMG (high mobility group) box,
PF01388: ARID/BRIGHT DNA binding domain
Length = 448
Score = 36.7 bits (81), Expect = 0.009
Identities = 21/90 (23%), Positives = 45/90 (50%)
Frame = +1
Query: 247 HVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRT 426
H K + + F RL P + ++S+ +G +W L+E+EKL + +A + +
Sbjct: 262 HPKPNRSGYNFFFAEQHARLKPLHPG-KDRDISRMIGELWNKLNEDEKLIYQGKAMEDKE 320
Query: 427 QHKKQHPDYKYQPRRRKPPLASASTPRVKR 516
+++ + DY+ +++ L S + P +R
Sbjct: 321 RYRTEMEDYR--EKKKNGQLISNAVPLQQR 348
>At3g13350.1 68416.m01680 high mobility group (HMG1/2) family
protein / ARID/BRIGHT DNA-binding domain-containing
protein low similarity to Dead Ringer Protein Chain A
Dna-Binding Domain (GI:6573608), Arid-Dna Complex
(GI:20150982) from [Drosophila melanogaster]; contains
Pfam profiles PF00505: HMG (high mobility group) box,
PF01388: ARID/BRIGHT DNA binding domain
Length = 319
Score = 31.1 bits (67), Expect = 0.47
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 316 RPSLHNAE--LSKSLGSMWKNLSEEEKLPFIKEADKLRTQHKKQHPDYK 456
+P H E ++K +G MW NL+E EK + + K +++ + +YK
Sbjct: 257 KPEYHGQERSITKKIGHMWSNLTESEKQVYQDKGVKDVERYRIEMLEYK 305
>At1g55650.1 68414.m06370 high mobility group (HMG1/2) family
protein / ARID/BRIGHT DNA-binding domain-containing
protein low similarity to Dead Ringer Protein Chain A
Dna-Binding Domain (GI:6573608), Arid-Dna Complex
(GI:20150982) from [Drosophila melanogaster]; contains
Pfam profiles PF00505: HMG (high mobility group) box,
PF01388: ARID/BRIGHT DNA binding domain
Length = 337
Score = 31.1 bits (67), Expect = 0.47
Identities = 18/82 (21%), Positives = 36/82 (43%)
Frame = +1
Query: 253 KRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQH 432
KR + F R+ AE K+ G+MW NLSE ++ + +++ + ++
Sbjct: 216 KRQRTGYNFFVAEQSVRIKAENAG-QKVSSPKNFGNMWTNLSESDRKVYYEKSREDGKRY 274
Query: 433 KKQHPDYKYQPRRRKPPLASAS 498
K + Y+ R + +A+
Sbjct: 275 KMEILQYRSLMESRVAEIVAAT 296
>At4g08810.1 68417.m01450 expressed protein
Length = 552
Score = 30.3 bits (65), Expect = 0.82
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 346 KSLGSMWKNLSEEEKLPFIKEADKLRTQHKKQ-HPDYKY 459
K L +W+NL PF DKLR+Q+K DY Y
Sbjct: 454 KGLVQVWRNLYVATNEPFYNYFDKLRSQYKVHLLDDYSY 492
>At2g36400.1 68415.m04467 expressed protein nearly identical to
transcription activator GRL3 [Arabidopsis thaliana]
GI:21539884 (unpublished); supporting cDNA
gi|21539883|gb|AY102636.1|
Length = 398
Score = 30.3 bits (65), Expect = 0.82
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = -1
Query: 185 IFTSFPTASFISSLSPDLSRSWPQL 111
+FT PT+S +SSLSPD S +P++
Sbjct: 49 LFTPEPTSSKLSSLSPDSSSRFPKM 73
>At2g18876.1 68415.m02201 expressed protein
Length = 382
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -1
Query: 428 CVRNLSASLMKGSFSSSLKFFHMDPNDLLSSALCREGRSADKRRRIACANTMN 270
C++ L+ SL+ FS+SL F DP + + C ++R + + N
Sbjct: 37 CIKYLNQSLVTSGFSASLDLFATDPVSIARTCNCVYALIQQRQRDVEFRESAN 89
>At1g59760.1 68414.m06729 ATP-dependent RNA helicase, putative
similar to SP|P47047 ATP-dependent RNA helicase DOB1
{Saccharomyces cerevisiae}, HUA enhancer 2 [Arabidopsis
thaliana] GI:16024936; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 988
Score = 29.5 bits (63), Expect = 1.4
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Frame = -1
Query: 512 LTLGVEAEASGGFRRRGWYL*SGCCFLCCVRNL----SASLMKGSFSSSLKFFHMDPNDL 345
L+ G + SG RRG G C L + + S++KGS S FH+ N L
Sbjct: 446 LSSGEYIQMSGRAGRRGIDK-RGICILMVDEKMEPAVAKSMLKGSADSLNSAFHLSYNML 504
Query: 344 LSSALCREG 318
L+ C EG
Sbjct: 505 LNQLRCEEG 513
>At5g54370.1 68418.m06770 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein (GI:1350543)[Picea
glauca]
Length = 337
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 251 SRDR*MHSWCSRKRCAAVCRPNDPPCTTPNSANH*DP 361
S+++ ++ C R C + CR P C P SA + DP
Sbjct: 55 SKNKVCYADCDRPTCKSQCRMRKPNCNRPGSACY-DP 90
>At1g76110.1 68414.m08838 high mobility group (HMG1/2) family
protein / ARID/BRIGHT DNA-binding domain-containing
protein low similarity to high mobility group protein
[Plasmodium falciparum] GI:790198; contains Pfam
profiles PF00505: HMG (high mobility group) box,
PF01388: ARID/BRIGHT DNA binding domain
Length = 338
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +1
Query: 337 ELSKSLGSMWKNLSEEEKLPFIKEADKLRTQHKKQHPDYKYQPRRR 474
E +K +G W NLS EE++ + K + +++++ +Y+ R R
Sbjct: 283 EFTKLIGESWSNLSTEERMVYQDIGLKDKERYQRELNEYRETLRLR 328
>At5g05330.1 68418.m00574 hypothetical protein
Length = 221
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +1
Query: 259 PMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQHKK 438
P + F+ F + R + + + S+ ++WKN+S E++ PF A ++ + H +
Sbjct: 108 PRSPFVFFLEEFRENYNGDL-----VDASRICFNVWKNMSAEDQKPFNARAMEVDSAHSR 162
Query: 439 Q 441
+
Sbjct: 163 K 163
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 424 TQHKKQHPDYKYQPRRRKPPLASASTPRVKRE 519
++H K D Y PRRR ++ + PR +RE
Sbjct: 172 SRHSKVREDDLYSPRRRSRSISRSPLPRNERE 203
>At3g52180.1 68416.m05729 protein tyrosine phosphatase/kinase
interaction sequence protein (PTPKIS1) identical to
PTPKIS1 protein [Arabidopsis thaliana] GI:11595504;
contains Pfam profile PF00782: Dual specificity
phosphatase, catalytic domain
Length = 379
Score = 28.3 bits (60), Expect = 3.3
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = +1
Query: 214 PTKGGGCMRRPHVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEK 390
P G GC++R H + M+ + ++ R LH SKS M +EEK
Sbjct: 14 PLLGFGCIQRDHSSSSSSLKMLISPPIKANDPKSRLVLHAVSESKSSSEMSGVAKDEEK 72
>At1g48090.2 68414.m05363 C2 domain-containing protein contains Pfam
profile: PF00168 C2 domain
Length = 3427
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 292 MRRRLSAERPSLHNAELSK--SLGSMWKNLSEEEKLPFIKEADKLRTQHK 435
+R+ L ER +L++ S + W N++ EE + ++ K +T+HK
Sbjct: 254 LRKSLQLERLALYHDSNSFPWEIEKQWDNITPEEWIEMFEDGIKEQTEHK 303
>At1g48090.1 68414.m05362 C2 domain-containing protein contains Pfam
profile: PF00168 C2 domain
Length = 4144
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 292 MRRRLSAERPSLHNAELSK--SLGSMWKNLSEEEKLPFIKEADKLRTQHK 435
+R+ L ER +L++ S + W N++ EE + ++ K +T+HK
Sbjct: 254 LRKSLQLERLALYHDSNSFPWEIEKQWDNITPEEWIEMFEDGIKEQTEHK 303
>At1g26820.1 68414.m03268 ribonuclease 3 (RNS3) identical to
ribonuclease SP:P42815 Ribonuclease 3 precursor (EC
3.1.27.1) {Arabidopsis thaliana}
Length = 222
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 155 ISSLSPDLSRSWPQLMVTSND 93
+S L DL R WP L SND
Sbjct: 83 VSDLMSDLQREWPTLSCPSND 103
>At5g23405.2 68418.m02742 high mobility group (HMG1/2) family
protein contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 148
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 271 FMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEA 411
F VF R+ + E SK MWK+++E+EK ++ +A
Sbjct: 69 FAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTEDEKKDYLDKA 115
>At5g23405.1 68418.m02741 high mobility group (HMG1/2) family
protein contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 149
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 271 FMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEA 411
F VF R+ + E SK MWK+++E+EK ++ +A
Sbjct: 70 FAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTEDEKKDYLDKA 116
>At4g31780.2 68417.m04510 1,2-diacylglycerol
3-beta-galactosyltransferase, putative /
monogalactosyldiacylglycerol synthase, putative / MGDG
synthase, putative similar to MGD synthase type A from
Arabidopsis thaliana [gi:9927297], similar to
monogalactosyldiacylglycerol synthase, Cucumis sativus,
PID:g1805254
Length = 533
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -3
Query: 252 DVWTTHTPTTFRWL-RQYCIVVKY 184
D+WT HTP F L R Y +VK+
Sbjct: 180 DLWTDHTPWPFNQLPRSYNFLVKH 203
>At4g31780.1 68417.m04509 1,2-diacylglycerol
3-beta-galactosyltransferase, putative /
monogalactosyldiacylglycerol synthase, putative / MGDG
synthase, putative similar to MGD synthase type A from
Arabidopsis thaliana [gi:9927297], similar to
monogalactosyldiacylglycerol synthase, Cucumis sativus,
PID:g1805254
Length = 504
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -3
Query: 252 DVWTTHTPTTFRWL-RQYCIVVKY 184
D+WT HTP F L R Y +VK+
Sbjct: 180 DLWTDHTPWPFNQLPRSYNFLVKH 203
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/69 (21%), Positives = 29/69 (42%)
Frame = +1
Query: 238 RRPHVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADK 417
R+ +R V + + ++ ++ E SK ++ + EEEK P + K
Sbjct: 18 RKERKRREAEELAVREKKISKKHKSKSKEEEKPEKSKKKSKKYEEVEEEEKSPSPSPSPK 77
Query: 418 LRTQHKKQH 444
+ KK+H
Sbjct: 78 KSKESKKKH 86
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,879,508
Number of Sequences: 28952
Number of extensions: 262092
Number of successful extensions: 895
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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