Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312H04f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 184 5e-48
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 184 9e-48
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 29 0.32
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 27 1.7
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 3.0
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 26 3.9
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 25 5.2
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo... 25 5.2
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 25 5.2
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 6.8
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 9.0
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy... 25 9.0
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 184 bits (449), Expect = 5e-48
Identities = 93/158 (58%), Positives = 113/158 (71%)
Frame = -3
Query: 516 RGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATP 337
RGGN K+RALRLD+GNFSWGSE ++KTRII V Y+ SNNELVRT TL K+AIV +DA P
Sbjct: 49 RGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAP 108
Query: 336 FRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHT 157
FR WYE+HY + +G KG K T +S+ RK+ AR +KV+ ALE QF
Sbjct: 109 FRVWYETHYGILMG-SKGKKATSTP-----NPKSKHVQRKHSARLGDSKVDSALETQFAA 162
Query: 156 GRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 43
GRL A V+SRPGQ GR DGYILEG+EL FYLR++ K+
Sbjct: 163 GRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 184 bits (447), Expect = 9e-48
Identities = 93/158 (58%), Positives = 113/158 (71%)
Frame = -3
Query: 516 RGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATP 337
RGGN K+RALRLD+GNFSWGSE ++KTRII V Y+ SNNELVRT TL K+AIV +DA P
Sbjct: 49 RGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAP 108
Query: 336 FRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHT 157
FR WYE+HY + +G KG K T +S+ RK+ AR +KV+ ALE QF
Sbjct: 109 FRVWYETHYGILMG-SKGKKATATP-----TPKSKHVQRKHSARLGDSKVDSALETQFAA 162
Query: 156 GRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 43
GRL A V+SRPGQ GR DGYILEG+EL FYLR++ K+
Sbjct: 163 GRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 29.5 bits (63), Expect = 0.32
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 66 DRTRVLCLLRCNHRRDHTDLGDSPRKPANAPCGIALLE 179
D + CLLR H+RD + + RK N G LLE
Sbjct: 434 DANIIPCLLRSKHKRDKANPENKERKLVNNLLGAQLLE 471
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/73 (21%), Positives = 33/73 (45%)
Frame = -3
Query: 345 ATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQ 166
+TP + H KKG+K+ A++ ++R + AR+ A + K ++E+
Sbjct: 754 STPDTTGSDIHIVSEKRGKKGSKVITAKKVSAKERREARRARRQTALEESLKAPISIEDA 813
Query: 165 FHTGRLLACVASR 127
+LA + +
Sbjct: 814 TDPQTILAILKQK 826
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = -3
Query: 462 WGSEC--STRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRK 289
WGS+ +K + +V+ +++ + +T L AT F + +S+Y +PL R+
Sbjct: 250 WGSQSYLQEKKAGLAEVLNISTSQQKPKTTALDYEVFRHEMATKFSSFADSYYPVPLDRE 309
Query: 288 K 286
+
Sbjct: 310 Q 310
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 323 YHCLNGVASTTTIAFLTRVFVRTNS 397
++C N V S T + + VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 401 LDALYTTSMIRVLRVEHSDPQEKLPVSRR 487
L+ + T S +V R H DP KLP RR
Sbjct: 193 LEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221
>SPAC18G6.06 |||U3 snoRNP-associated protein
Utp11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 25.4 bits (53), Expect = 5.2
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -3
Query: 252 INKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGK 82
++ K +K A + L RQ+ K A EE+ RLL G+ GR ++ GK
Sbjct: 188 LHSKLKEKAATELLLRQKRDKKLAAAEERVELDRLL------QGKGGRQKKKVVNGK 238
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.4 bits (53), Expect = 5.2
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -3
Query: 519 SRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDAT 340
+R T R+L +G S S ++ +TR V +AS+N L+ + ++ V T
Sbjct: 541 TRRSRTPIRSL---SGRSSVASSRNSSRTRSYSNVSSASSNSLISIISSKPSSSTVQRQT 597
Query: 339 PFRQWYE 319
PF +E
Sbjct: 598 PFHSPFE 604
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 504 TKYRALRLDTGNFSWGSECSTRKTRI 427
T YRA+ LDTG+ E + K RI
Sbjct: 1133 TVYRAVNLDTGDLMAVKEVALHKPRI 1158
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -2
Query: 379 DPCQECNCCSRCNSIQAVV 323
D C++ CS+C+++Q VV
Sbjct: 145 DHCKKMRRCSKCDAMQGVV 163
>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 581
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 104 SARPH*PGRLATQASKRPVWNCSSRAPSTLARRC 205
S +PH P + T+ +P + S S LAR+C
Sbjct: 154 SEQPHTPCKKGTKIKLKPPQSPLSPTTSLLARKC 187
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,881,290
Number of Sequences: 5004
Number of extensions: 32684
Number of successful extensions: 103
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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