Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312H04f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0) 244 5e-65
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068) 51 7e-07
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32) 33 0.19
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31) 30 1.3
SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_11| Best HMM Match : E6 (HMM E-Value=2.2) 29 2.3
SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8) 29 3.1
SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88) 28 5.4
SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07) 27 9.4
>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
Length = 192
Score = 244 bits (596), Expect = 5e-65
Identities = 114/161 (70%), Positives = 132/161 (81%)
Frame = -3
Query: 519 SRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDAT 340
+RGGN K+RA RLDT NFSWGSE TRK RIIDVVYNASNNELVRTKTLVKN IV VD+T
Sbjct: 32 TRGGNRKFRAFRLDTENFSWGSESCTRKARIIDVVYNASNNELVRTKTLVKNCIVQVDST 91
Query: 339 PFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFH 160
PFRQWYE+HY +P+GRKK + TE E+ I+NKKRS RK AR+ AKV +EEQF
Sbjct: 92 PFRQWYEAHYAIPIGRKKTKQPTEEEQEILNKKRSNHCTRKLEARKANAKVAPGMEEQFV 151
Query: 159 TGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 37
TGRL ACV+SRPGQ GR DGYILEGKELEFY++K+K+++AK
Sbjct: 152 TGRLYACVSSRPGQSGRCDGYILEGKELEFYIKKLKARKAK 192
>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
Length = 147
Score = 50.8 bits (116), Expect = 7e-07
Identities = 22/67 (32%), Positives = 41/67 (61%)
Frame = -3
Query: 513 GGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPF 334
GG+TK +ALR++ G ++ S+ + I+ V+++ +N E + +VK +IV VD PF
Sbjct: 47 GGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHSFANKEHIERNVIVKGSIVQVDNKPF 106
Query: 333 RQWYESH 313
W++ +
Sbjct: 107 EDWFQEY 113
>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
Length = 905
Score = 32.7 bits (71), Expect = 0.19
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -3
Query: 243 KRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGK 82
++S+K K + +L +EG E H G LL S C R GY ++G+
Sbjct: 133 EKSEKYTEKKIRSDKLTWIEGNEEGASHIGDLLLKYDSLVSSCSRRIGYDIQGR 186
>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
Length = 883
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = -3
Query: 288 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGR 151
+ AKL + EE II K+ + TA + ++ K++ ALE +G+
Sbjct: 701 RAAKLQQEEEEIIRKREANNTALAAIGPRKKRKLDEALEATRPSGQ 746
>SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 230
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = -3
Query: 444 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 331
T++ +I D++ N N VR +TL+ NA +++D F+
Sbjct: 18 TKRKKIADILSNEIRN--VRERTLILNAALIIDICVFK 53
>SB_11| Best HMM Match : E6 (HMM E-Value=2.2)
Length = 485
Score = 29.1 bits (62), Expect = 2.3
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Frame = -3
Query: 336 FRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLA---KVEGALE-- 172
F W + L + +G + E +E + N +KT + YL K++GA E
Sbjct: 174 FEAWKDIRKVLLNYKNEGTGIVEVDEGVTNN--IEKTLKLYLISPNHEIDQKLKGAPEKD 231
Query: 171 ----EQFHTGRLLACVASRPGQCGRADGYILEG 85
E FH L CV + + DGY L G
Sbjct: 232 IYFYETFHFLGGLQCVPLQENEISITDGYALMG 264
>SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8)
Length = 530
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = +2
Query: 314 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDALYTTSMIRVLRVEHS 454
CD+ HC + T+T+ + +V + + ++ ++ V R +HS
Sbjct: 448 CDNDHCSQELCLTSTVDQIQQVLNNCDKIKTQVHVEGLVEVWRKDHS 494
>SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 246 KKRSQKTARKYLARQRLAKVEGALEE 169
K+R QK + Y RQR ++ +LEE
Sbjct: 15 KRRKQKATKSYAERQRRTRINKSLEE 40
>SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88)
Length = 842
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 169 AIPHGAFAGLRGESPRSVW 113
A PH A +G+R SPR +W
Sbjct: 108 ACPHHAVSGVRVSSPRGIW 126
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 169 AIPHGAFAGLRGESPRSVW 113
A PH A +G+R PRS+W
Sbjct: 139 AYPHHAVSGVRVSPPRSIW 157
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 169 AIPHGAFAGLRGESPRSVW 113
A PH A +G+R PRS+W
Sbjct: 201 ACPHHAVSGVRVSPPRSIW 219
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 169 AIPHGAFAGLRGESPRSVW 113
A PH A +G+R PRS+W
Sbjct: 232 ACPHHAVSGVRVSPPRSIW 250
>SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 720
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -2
Query: 445 NSQNPYH*CCV*CI*Q*-IGAYKDPCQECNCCSRCNSI 335
+S YH C C+ I Y DP EC CS+C+ +
Sbjct: 192 DSLEVYHECFGGCVGTLEIELYTDPYAECVTCSQCDGV 229
>SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07)
Length = 717
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 190 LSKTLPCQVFSCCLLTSLLVD 252
+ K+LP + SC LLTSL++D
Sbjct: 523 IGKSLPLLINSCTLLTSLVLD 543
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,632,531
Number of Sequences: 59808
Number of extensions: 268360
Number of successful extensions: 818
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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