Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312H04f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...   220   4e-58
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...   215   1e-56
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea...    31   0.47 
At1g73260.1 68414.m08478 trypsin and protease inhibitor family p...    29   1.9  
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ...    29   2.5  
At5g41820.1 68418.m05092 geranylgeranyl transferase alpha subuni...    28   4.4  
At5g05240.1 68418.m00560 expressed protein similar to unknown pr...    27   7.7  
At3g08630.1 68416.m01002 expressed protein                             27   7.7  

>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score =  220 bits (538), Expect = 4e-58
 Identities = 109/170 (64%), Positives = 131/170 (77%), Gaps = 10/170 (5%)
 Frame = -3

Query: 516 RGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATP 337
           RGGN K+RALRLDTGN+SWGSE +TRKTR++DVVYNASNNELVRTKTLVK+AIV VDA P
Sbjct: 50  RGGNVKWRALRLDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAP 109

Query: 336 FRQWYESHYTLPLGR-KKGAKLT-----EAEEAII----NKKRSQKTARKYLARQRLAKV 187
           F+QWY SHY + LGR KK A  T     E EEA +      K+S    RK  +RQ    +
Sbjct: 110 FKQWYLSHYGVELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSL 169

Query: 186 EGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 37
           +  +E+QF +GRLLAC++SRPGQCGRADGYILEGKELEFY++KI+ K+ K
Sbjct: 170 DSHIEDQFASGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKKGK 219


>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score =  215 bits (526), Expect = 1e-56
 Identities = 104/160 (65%), Positives = 122/160 (76%)
 Frame = -3

Query: 516 RGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATP 337
           RGGN K+RALRLDTGNFSWGSE  TRKTRI+DV YNASNNELVRT+TLVK+AIV VDA P
Sbjct: 50  RGGNVKWRALRLDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAP 109

Query: 336 FRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHT 157
           F+Q Y  HY + +GRKK  +    EE     K+S    RK   RQ    ++  LEEQF +
Sbjct: 110 FKQGYLQHYGVDIGRKKKGEAVTTEEV----KKSNHVQRKLEMRQEGRALDSHLEEQFSS 165

Query: 156 GRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 37
           GRLLAC+ASRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 166 GRLLACIASRPGQCGRADGYILEGKELEFYMKKLQKKKGK 205


>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
           family protein similar to Vegetatible incompatibility
           protein HET-E-1 (SP:Q00808) {Podospora anserina};
           contains 5 WD-40 repeats (PF00400); similar to  beta
           transducin-like protein HET-E2C*4
           (GP:17225206)[Podospora anserina]
          Length = 530

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = -3

Query: 291 KKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVAS-RPGQC 115
           KKG KLT  ++ ++ K R ++     L  ++ A V   +EE     +L+ CV++   G+ 
Sbjct: 393 KKGLKLTRHDK-LLKKFRHKEALVSVLEEKKPANVVAVMEELVARRKLMKCVSNMEEGEL 451

Query: 114 GRADGYI 94
           G   G++
Sbjct: 452 GMLLGFL 458


>At1g73260.1 68414.m08478 trypsin and protease inhibitor family
           protein / Kunitz family protein similar to trypsin
           inhibitor propeptide [Brassica oleracea] GI:841208;
           contains Pfam profile PF00197: Trypsin and protease
           inhibitor
          Length = 215

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 393 LVRTKTLVKNAI-VVVDATPFRQWYESHYTLPLGRKKGAKLTEA 265
           L  T  L  NA   VVD      ++ES+Y LP+ R +G  LT A
Sbjct: 16  LALTAVLASNAYGAVVDIDGNAMFHESYYVLPVIRGRGGGLTLA 59


>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
           repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
           sapiens}; similar to WD repeat protein Srw1
           -Schizosaccharomyces pombe,PID:d1023012
          Length = 475

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -3

Query: 513 GGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVV 352
           GG T  R +R      +    C    +++ ++V++ + NELV T    +N I+V
Sbjct: 353 GGGTADRCIRFWNTTTNTHLNCVDTNSQVCNLVWSKNVNELVSTHGYSQNQIIV 406


>At5g41820.1 68418.m05092 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 687

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +2

Query: 383 VRTNSLLDALYTTSMIRVLRVEHSDPQEKLPVSRRSARYLVFPP 514
           +R+ S LD+L     +RVL V H+    +LPV   + RYL   P
Sbjct: 580 IRSFSALDSLRHLKQLRVLDVSHNHICGELPVD--TTRYLCSSP 621


>At5g05240.1 68418.m00560 expressed protein similar to unknown
           protein (gb AAD32815.2)
          Length = 530

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -3

Query: 318 SHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEE 169
           SH  +P  +K+G K     +A + KKR  +   +     RLA   G L E
Sbjct: 190 SHGGIPAPKKRGRKTKINNDAAVAKKRKIERKEEVDRFARLAAPSGLLNE 239


>At3g08630.1 68416.m01002 expressed protein
          Length = 339

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 115 TLTWATRHASQQTPRVELLF*STLNLSKTLPCQVFSCCLLTSLLVDN 255
           +LTWAT        R + L  +   L K+LP  VF   ++   +V+N
Sbjct: 256 SLTWATHMGVSANVRYQTLNGAEFLLEKSLPPLVFKTSVIALRVVNN 302


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,020,488
Number of Sequences: 28952
Number of extensions: 177825
Number of successful extensions: 552
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)