BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS312H01f (521 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_35566| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8 SB_4752| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8 SB_10049| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1 SB_48396| Best HMM Match : ASC (HMM E-Value=0) 27 9.4 SB_23443| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4 >SB_35566| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 520 Score = 29.5 bits (63), Expect = 1.8 Identities = 12/43 (27%), Positives = 25/43 (58%) Frame = +3 Query: 57 DLSSPMVSKDWSEFRRKELVSYFNYTNMYTHNMYALRYAFCEL 185 D SS + DW F +++ + +NY ++Y + + +L+ F +L Sbjct: 16 DESSQALCTDWKMFPSQDIPAMYNYGHLYHYLVESLQNEFLDL 58 >SB_4752| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 430 Score = 29.5 bits (63), Expect = 1.8 Identities = 12/43 (27%), Positives = 25/43 (58%) Frame = +3 Query: 57 DLSSPMVSKDWSEFRRKELVSYFNYTNMYTHNMYALRYAFCEL 185 D SS + DW F +++ + +NY ++Y + + +L+ F +L Sbjct: 91 DESSQALCTDWKMFPSQDIPAMYNYGHLYHYLVESLQNEFLDL 133 >SB_10049| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 338 Score = 27.5 bits (58), Expect = 7.1 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%) Frame = +3 Query: 66 SPMVSKDWSEFRRKEL-VSYFNYTN----MYTHNMYALRYAFCELLNLVNVVGQIF 218 S + K SE+ E V ++++N MY H M AL + E N +N+ G IF Sbjct: 117 SHYILKTLSEYNLTEKPVFLYSFSNGGCAMYFHIMEALTKSDSEFFNTINIRGSIF 172 >SB_48396| Best HMM Match : ASC (HMM E-Value=0) Length = 511 Score = 27.1 bits (57), Expect = 9.4 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 1/104 (0%) Frame = +3 Query: 141 YTHNMYALRYAFCELLNLVNVVGQIFILDLFLGGSFRNYGAAVAAFTHTPRIPNDFTNFT 320 YT ++ L + F + ++ I ++ +G S + V +++ N FT T Sbjct: 55 YT-TLHGLHFLFQPIPRARKIIWGIMLVIATVGLSIQIGNGLVKVYSY-----NIFTAKT 108 Query: 321 SVNPMDEFFPKLTKCWLRNYGPSGSL-ELKDRLCVLPLNIVNEK 449 V P FP +T C SGS+ EL+ R +N+ +E+ Sbjct: 109 FVRPESLPFPAITICNQNMLPVSGSVDELRARFIGEDMNVTSER 152 >SB_23443| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 150 Score = 27.1 bits (57), Expect = 9.4 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Frame = +3 Query: 216 FILDLFLGGSFRNYGAAVAAFTHTPRIPNDFTNFTSVN--PMDEFFPK 353 +++ L GG FR + + T TP + ND + T + PM PK Sbjct: 51 YVVQLSSGGVFRRHVDHLRLRTSTPEVANDLQSSTELAQVPMQTTAPK 98 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,552,280 Number of Sequences: 59808 Number of extensions: 338829 Number of successful extensions: 875 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 794 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 875 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1172759136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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