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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312H01f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35566| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_4752| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.8  
SB_10049| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_48396| Best HMM Match : ASC (HMM E-Value=0)                         27   9.4  
SB_23443| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_35566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 520

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +3

Query: 57  DLSSPMVSKDWSEFRRKELVSYFNYTNMYTHNMYALRYAFCEL 185
           D SS  +  DW  F  +++ + +NY ++Y + + +L+  F +L
Sbjct: 16  DESSQALCTDWKMFPSQDIPAMYNYGHLYHYLVESLQNEFLDL 58


>SB_4752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +3

Query: 57  DLSSPMVSKDWSEFRRKELVSYFNYTNMYTHNMYALRYAFCEL 185
           D SS  +  DW  F  +++ + +NY ++Y + + +L+  F +L
Sbjct: 91  DESSQALCTDWKMFPSQDIPAMYNYGHLYHYLVESLQNEFLDL 133


>SB_10049| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = +3

Query: 66  SPMVSKDWSEFRRKEL-VSYFNYTN----MYTHNMYALRYAFCELLNLVNVVGQIF 218
           S  + K  SE+   E  V  ++++N    MY H M AL  +  E  N +N+ G IF
Sbjct: 117 SHYILKTLSEYNLTEKPVFLYSFSNGGCAMYFHIMEALTKSDSEFFNTINIRGSIF 172


>SB_48396| Best HMM Match : ASC (HMM E-Value=0)
          Length = 511

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
 Frame = +3

Query: 141 YTHNMYALRYAFCELLNLVNVVGQIFILDLFLGGSFRNYGAAVAAFTHTPRIPNDFTNFT 320
           YT  ++ L + F  +     ++  I ++   +G S +     V  +++     N FT  T
Sbjct: 55  YT-TLHGLHFLFQPIPRARKIIWGIMLVIATVGLSIQIGNGLVKVYSY-----NIFTAKT 108

Query: 321 SVNPMDEFFPKLTKCWLRNYGPSGSL-ELKDRLCVLPLNIVNEK 449
            V P    FP +T C       SGS+ EL+ R     +N+ +E+
Sbjct: 109 FVRPESLPFPAITICNQNMLPVSGSVDELRARFIGEDMNVTSER 152


>SB_23443| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +3

Query: 216 FILDLFLGGSFRNYGAAVAAFTHTPRIPNDFTNFTSVN--PMDEFFPK 353
           +++ L  GG FR +   +   T TP + ND  + T +   PM    PK
Sbjct: 51  YVVQLSSGGVFRRHVDHLRLRTSTPEVANDLQSSTELAQVPMQTTAPK 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,552,280
Number of Sequences: 59808
Number of extensions: 338829
Number of successful extensions: 875
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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