Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312H01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   4.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   4.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   4.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   5.8  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   5.8  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   7.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   7.7  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   7.7  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   7.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.7  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
 Frame = -2

Query: 430 KGSTHNRSFNSREPEGP*FLNQHLVSLGK--NSSMGLT 323
           KG T   + N R  E      QHL+  GK  N   G+T
Sbjct: 363 KGGTLENTINGRADEEAAPAPQHLIHPGKDINKLYGMT 400


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
 Frame = -2

Query: 430 KGSTHNRSFNSREPEGP*FLNQHLVSLGK--NSSMGLT 323
           KG T   + N R  E      QHL+  GK  N   G+T
Sbjct: 363 KGGTLENTINGRADEEAAPAPQHLIHPGKDINKLYGMT 400


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
 Frame = -2

Query: 430 KGSTHNRSFNSREPEGP*FLNQHLVSLGK--NSSMGLT 323
           KG T   + N R  E      QHL+  GK  N   G+T
Sbjct: 301 KGGTLENTINGRADEEAAPAPQHLIHPGKDINKLYGMT 338


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 214 YLFWTCSLVVHSVTMV 261
           Y  W   +V+HSVT V
Sbjct: 113 YEIWVPDIVMHSVTSV 128


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 414 IDPLIQESLKVH 379
           I PLIQ+ LK+H
Sbjct: 315 ITPLIQKHLKIH 326


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 88  QSFETIGLLRSAASAFSLPPSHIFHRY 8
           QS ET+ ++ S     +LP   IF RY
Sbjct: 346 QSDETLQMIASMKIKEALPHVPIFDRY 372


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
          protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 46 AFSLPPSHIFHRYR 5
          AF +PP ++  RYR
Sbjct: 29 AFDIPPDYLPDRYR 42


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 88  QSFETIGLLRSAASAFSLPPSHIFHRY 8
           QS ET+ ++ S     +LP   IF RY
Sbjct: 346 QSDETLQMIASMKIKEALPHVPIFDRY 372


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 88  QSFETIGLLRSAASAFSLPPSHIFHRY 8
           QS ET+ ++ S     +LP   IF RY
Sbjct: 346 QSDETLQMIASMKIKEALPHVPIFDRY 372


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -3

Query: 84   PSKPLDC*DQLPVPSACLLPTFSTGI 7
            P KP      +P P+   +P+F  G+
Sbjct: 1128 PQKPFTSPGGIPGPNGIKMPSFMEGM 1153


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,032
Number of Sequences: 438
Number of extensions: 3809
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)