Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312G12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    28   0.97 
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   5.2  
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce...    25   5.2  
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...    25   9.0  
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...    25   9.0  
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    25   9.0  

>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 495  AIRLKTKLCKNAPLILSKLHDKYSTILKRL 406
            A++   KLC +  LIL++ H K + I+K+L
Sbjct: 1659 ALQYMRKLCNHPALILTEKHPKRNAIVKQL 1688


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = +2

Query: 164 TSYGE*QIKIGRATILATIERYLFNKKNME---RMK*IILNYHFPLRPVMLHKIIRNVAT 334
           T YG     +G AT++A    Y  N+ N +    +     +Y F  +    HK+ +NV  
Sbjct: 153 TGYGATDDGMGVATVMAIARYYAKNQPNRDLIININNAEEDYLFGAKAFASHKLSKNVTA 212

Query: 335 YI 340
           ++
Sbjct: 213 FV 214


>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 91  ISTIKLITAAFQYETHTDQPVPLQTS 14
           +  I+L  +A+ Y+  TD+P P+ TS
Sbjct: 428 LDKIELGESAYYYKDSTDEPPPITTS 453


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 157 LDHELR*VTNKNRPCYYPRND 219
           L H +R +     PCY PR D
Sbjct: 69  LPHRVRLLLRAGHPCYRPRRD 89


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 157 LDHELR*VTNKNRPCYYPRND 219
           L H +R +     PCY PR D
Sbjct: 69  LPHRVRLLLRAGHPCYRPRRD 89


>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 443 LLSISGAFLHNLVLRRIAEFY 505
           ++S+ GAF H+ VL    EFY
Sbjct: 238 IVSLCGAFNHDEVLNHAIEFY 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,003,507
Number of Sequences: 5004
Number of extensions: 37669
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)