Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312G12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   1.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   3.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.7  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   7.7  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   7.7  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   7.7  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   7.7  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   7.7  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   7.7  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   7.7  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   7.7  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = -2

Query: 115 YLHLINVKISTIKLITAAFQYETHTDQPVPLQTSL 11
           Y+H   +    +K+I A   + TH  +P+ ++  +
Sbjct: 553 YIHAQQIAWMALKMIQACSHHLTHKGKPIRMRIGI 587


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +1

Query: 103 LNVSKQG-IKLLNFSYVRNLDH 165
           L +  QG +KL++F + + LDH
Sbjct: 497 LLLDSQGYVKLVDFGFAKRLDH 518


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 169 LR*VTNKNRPCYYP 210
           +R V  K + CYYP
Sbjct: 378 MRTVRGKEKTCYYP 391


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 169 LR*VTNKNRPCYYP 210
           +R V  K + CYYP
Sbjct: 378 MRTVRGKEKTCYYP 391


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 304 HHRPKWKVIIEYDL 263
           H R K K+I+EY+L
Sbjct: 52  HERLKKKMILEYEL 65


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 304 HHRPKWKVIIEYDL 263
           H R K K+I+EY+L
Sbjct: 52  HERLKKKMILEYEL 65


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 304 HHRPKWKVIIEYDL 263
           H R K K+I+EY+L
Sbjct: 52  HERLKKKMILEYEL 65


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 304 HHRPKWKVIIEYDL 263
           H R K K+I+EY+L
Sbjct: 52  HERLKKKMILEYEL 65


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 304 HHRPKWKVIIEYDL 263
           H R K K+I+EY+L
Sbjct: 52  HERLKKKMILEYEL 65


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 304 HHRPKWKVIIEYDL 263
           H R K K+I+EY+L
Sbjct: 52  HERLKKKMILEYEL 65


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 304 HHRPKWKVIIEYDL 263
           H R K K+I+EY+L
Sbjct: 52  HERLKKKMILEYEL 65


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 304 HHRPKWKVIIEYDL 263
           H R K K+I+EY+L
Sbjct: 52  HERLKKKMILEYEL 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,801
Number of Sequences: 438
Number of extensions: 3080
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)