Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312G11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    30   0.24 
SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|ch...    28   0.97 
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    26   3.0  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    25   5.2  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   6.8  
SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces po...    25   6.8  

>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 488 RDXINRRVSLHKNWLPRPWCYFQPSPWLPQRCP 390
           RD + +   LH N  PR  C+FQPS +     P
Sbjct: 463 RDNLRQHERLHVNASPRLACFFQPSGYYSSGAP 495


>SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 383 KEKGIFVVAKEKVGNNTRVWEASSYVK 463
           K+ G+F +AK K+ N T+VW  + Y K
Sbjct: 4   KKGGLFKIAK-KLRNGTKVWARAGYFK 29


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 249 WLLVWPFTHCYGIIFIHSLN-QDW 317
           W++V      Y ++F HSLN +DW
Sbjct: 162 WIMVVVLAQKYKVLFYHSLNLRDW 185


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = +2

Query: 308 SRLVLIICVSSYFILMGILTLY----TTLKEKGIFVVA 409
           S+L     ++  FIL+GIL LY     TL  KGI  VA
Sbjct: 413 SKLSATALIADVFILLGILYLYFWDVITLATKGIADVA 450


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +2

Query: 365 TLYTTLKEKGIFVVAKEKVGNNTRVWEASSYVKKHDD*YXLVIVMRDT 508
           T++  LK +GIF  + ++V NN   W         D  Y  +I    T
Sbjct: 527 TVFVKLKLQGIFSSSFQQVSNNMYSWIYDHVFSSSDHAYESLIYYMKT 574


>SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 167

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/72 (23%), Positives = 30/72 (41%)
 Frame = +2

Query: 203 KESFALIDGRLFXXXXXXXXXXXXXXWDYLYPFPQSRLVLIICVSSYFILMGILTLYTTL 382
           K+SF   D RL                +Y+Y F   +  L   +  YF+   +LT ++++
Sbjct: 27  KQSFVFEDIRLLIAIACIIPAGLAFGIEYVYGFGVLKSYLKYLLPLYFLASCLLTFWSSV 86

Query: 383 KEKGIFVVAKEK 418
            +     VA +K
Sbjct: 87  VKGSTVYVATKK 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,964,369
Number of Sequences: 5004
Number of extensions: 36505
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)