Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312G11f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0426 + 3239274-3239386,3239472-3239702,3242516-3242642,324...    29   3.0  
03_06_0680 - 35497868-35497884,35498058-35501961                       28   4.0  
03_05_0777 + 27636342-27637115                                         28   4.0  
01_07_0297 - 42583439-42583697,42583763-42583953,42583995-425842...    28   4.0  
05_03_0484 + 14599786-14602197                                         27   9.1  

>07_01_0426 +
           3239274-3239386,3239472-3239702,3242516-3242642,
           3242729-3242788,3242868-3242960,3243073-3243369,
           3243450-3243761,3243857-3244114,3244227-3244375,
           3244470-3245102,3245367-3245640,3245736-3245777,
           3246332-3246586,3246700-3246711
          Length = 951

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 280 MGLSLSIPSIKTGSNHLRVIIFHTDGYFDPLHY 378
           M LSL +PS  T    + V +F TDG  +P+ Y
Sbjct: 434 MYLSLPVPS--TAKRTMTVTVFSTDGSIEPISY 464


>03_06_0680 - 35497868-35497884,35498058-35501961
          Length = 1306

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 110 EAAKINKWDGAAAKNAVDDAIREVMTG 190
           EAA+  K +   AKN+  DA++EV++G
Sbjct: 246 EAARKEKNENVMAKNSPQDALKEVLSG 272


>03_05_0777 + 27636342-27637115
          Length = 257

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 104 TAEAAKINKWDGAAAKNAVDDAIREVMTGDLKCKESFAL 220
           TAEAA++ +W   A  + VD A R  +  D++ + ++ L
Sbjct: 130 TAEAAELERWRRHAMASLVDAAKRAAVMKDMEIERAWGL 168


>01_07_0297 -
           42583439-42583697,42583763-42583953,42583995-42584201,
           42584291-42584362,42584472-42584507
          Length = 254

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 361 FDPLHYIKREGHLCGSQGEG 420
           ++ +  I+REGHLCG  G G
Sbjct: 182 YEIVRIIQREGHLCGMTGNG 201


>05_03_0484 + 14599786-14602197
          Length = 803

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 283 GLSLSIPSIKTGSNHLRVIIFHTDGYFDPLHYIKRE 390
           GLS + P I   S H+  ++  T GY DP +Y +++
Sbjct: 615 GLSKANPDID--STHVSTVVKGTFGYLDPEYYRRKQ 648


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,045,652
Number of Sequences: 37544
Number of extensions: 250822
Number of successful extensions: 469
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)