Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312G10f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979...    97   1e-20
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254...    91   4e-19
04_03_0611 - 18011469-18012563,18012756-18012920,18013542-180136...    31   0.74 
03_05_0161 + 21400580-21401695                                         30   1.3  
01_05_0630 - 23811576-23811728,23812473-23812561,23812644-238127...    28   4.0  
04_04_0387 + 24869594-24871480                                         27   6.9  
01_04_0054 - 15456668-15459691                                         27   9.1  

>02_04_0659 -
           24797477-24797533,24797614-24797726,24797814-24797943,
           24798727-24798828,24798951-24798953
          Length = 134

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 54/131 (41%), Positives = 74/131 (56%)
 Frame = +3

Query: 6   RYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKY 185
           R+VE GRVALV  G   G+LV +VDV+DQ RALVD P   + R QI   +L LT  ++  
Sbjct: 5   RFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD--MVRCQINFKRLSLTDIKIDI 62

Query: 186 AFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRART 365
                   + KA  +A +  KW  S W +KL  +++RA + D+DRFK+  A++KR  A  
Sbjct: 63  KRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIR 122

Query: 366 AVFKSLKVKAA 398
                LK  AA
Sbjct: 123 QELAKLKKTAA 133


>04_04_0506 -
           25723809-25724299,25725082-25725237,25725316-25725445,
           25726484-25726585,25726630-25726671
          Length = 306

 Score = 91.5 bits (217), Expect = 4e-19
 Identities = 48/114 (42%), Positives = 68/114 (59%)
 Frame = +3

Query: 6   RYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKY 185
           R+VE GRVALV  G   G+LV +VDV+DQ RALVD P   + R QI   +L LT  ++  
Sbjct: 18  RFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD--MVRCQINFKRLSLTDIKIDI 75

Query: 186 AFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVK 347
                   + KA  +A +  KW  S W +KL  +++RA + D+DRFK+  A++K
Sbjct: 76  KRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIK 129


>04_03_0611 -
           18011469-18012563,18012756-18012920,18013542-18013639,
           18014541-18015498
          Length = 771

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = -2

Query: 478 GFLVAFLVRTFFAAALGIFFLPKVPARAAFTFKLLNTAVLARFLLTRAAVNLNLS*SVIC 299
           G +VA+L R F A    +          A  FK+L    + R  L      +NL  S++C
Sbjct: 320 GEIVAYLFRNFEAKFQSLILTLTDTPNVAVAFKILMNVNMERITLAMEIATINLEVSIVC 379


>03_05_0161 + 21400580-21401695
          Length = 371

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 157 SWFKRICCLGTPLPGPSTSARVWSITSTTLTN 62
           SWF   C  G P P P  +A V + TS+ L +
Sbjct: 308 SWFMDSCSYGLPSPPPPATAAVAATTSSNLNS 339


>01_05_0630 -
           23811576-23811728,23812473-23812561,23812644-23812764,
           23812867-23812992,23813399-23813505,23813742-23813856,
           23815071-23815274
          Length = 304

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 14/136 (10%)
 Frame = -2

Query: 505 RHKNNYFLAGFLVAFLVRTFF--AAALGIF-FLPKVPARAAFTFKLLNTAVLARFLL--- 344
           R  N+ +L G  + F +  +    A+LGI   LPK  A  A+   LL T   + + L   
Sbjct: 123 RTANSLWLDGRTIHFSINAWVLVVASLGILPILPKHIASKAYRLSLLGTICSSAYSLYVT 182

Query: 343 -------TRAAVNLNLS*SVICARF-SLFANFWAH*LSVHFSLSLASVHAFLTRRVGAVN 188
                    AA+   L   ++   F  L  +      +VH+ ++L  V   L   +  V 
Sbjct: 183 YGKPRAWNMAAIQPWLQSIIVAKDFVHLMFSLMMFTSNVHYKIALLPV---LCWALDHVA 239

Query: 187 AYLRRNFVRWSWFKRI 140
            +LRRNF R S ++++
Sbjct: 240 RFLRRNFARSSLYRQL 255


>04_04_0387 + 24869594-24871480
          Length = 628

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = +3

Query: 240 NEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAARAGTFGK 419
           +EK+ + QW Q + + +K  ++    +  + A+  + NR R    K ++++ ARA T   
Sbjct: 501 SEKYWDEQWKQAMKSSDKMEKLV---KTSIEASN-EYNRRRMQQEKEMELRMARANTMVM 556

Query: 420 K 422
           K
Sbjct: 557 K 557


>01_04_0054 - 15456668-15459691
          Length = 1007

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +3

Query: 84  IDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTA--PTRLVRKAWTDAKL 239
           +DQ  AL D    G+PR   R+ ++  T FR+++ +            WTD +L
Sbjct: 513 VDQIWALYDDR-DGMPRYYARIRRIDTTNFRVQFTWLEHDAKNEEEDKWTDEEL 565


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,032,421
Number of Sequences: 37544
Number of extensions: 287808
Number of successful extensions: 908
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)