Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312G07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    33   0.034
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    33   0.034
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    28   0.73 
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    28   0.73 
SPCC24B10.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    28   0.97 
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    27   1.3  
SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces pombe...    27   2.2  
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    27   2.2  
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    26   3.9  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    26   3.9  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   5.2  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   5.2  
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    25   6.8  
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    25   6.8  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    25   6.8  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   6.8  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   9.0  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    25   9.0  

>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 32.7 bits (71), Expect = 0.034
 Identities = 18/71 (25%), Positives = 35/71 (49%)
 Frame = +2

Query: 164 VDVVKQSTNVVLTANVTPKKPDSPQTEKDQDCFPAAEPKSNIPLRKDSFVAKAVESIIEN 343
           V+ V  +  ++  +N TP +  S   +        A+  + +   +D FVAK++    +N
Sbjct: 137 VENVSLTEAIIKNSNGTPLEDGSDSEDSGLGHDDIAKDAATLMRIRDEFVAKSIADSRQN 196

Query: 344 SHIDVKLSPAL 376
           +HID +L+  L
Sbjct: 197 AHIDAQLTTLL 207


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 32.7 bits (71), Expect = 0.034
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -2

Query: 142 EFWHTRLDFF*SPLVCLDSF---CYVCIFDWRLF 50
           EF+ T+L+FF  PL C  +F   C  C  DWRLF
Sbjct: 347 EFYETKLNFFTFPLECAINFHIDC-SCFDDWRLF 379


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +2

Query: 224 PDSPQTEKDQDCFPAAEPKSNIPLRKDSFVAKAVESIIEN---SHIDVKLSPALSRKSIE 394
           P + +TE++ D  P    +  +P+  D+ +    ESI      SH  V  + +LS+ +I 
Sbjct: 216 PAALETEENVDSQPMELDEPELPVGSDAPIIDVEESIAMKPLMSHDQVDDTASLSKATI- 274

Query: 395 KHSPAPQSPSTP 430
             S  P SP TP
Sbjct: 275 --SQQPLSPMTP 284


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 26/102 (25%), Positives = 43/102 (42%)
 Frame = +2

Query: 206 NVTPKKPDSPQTEKDQDCFPAAEPKSNIPLRKDSFVAKAVESIIENSHIDVKLSPALSRK 385
           N T   P+    EK+ +   ++   S  PL   +  + A    ++ +HI  K S +L   
Sbjct: 30  NSTTSNPELSHIEKESNA--SSIIISQQPLSPSNISSAAP---LDETHIATKASASLRNN 84

Query: 386 SIEKHSPAPQSPSTPKAFFKRKAGSVELQDXPEKPRTNSLST 511
           ++  H P+P S S+  +    K+   E     E     SLST
Sbjct: 85  NVSPHIPSPSSFSSSSSSDLDKSMLDEKHPDSEDITAVSLST 126


>SPCC24B10.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 110

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 18/81 (22%), Positives = 36/81 (44%)
 Frame = +2

Query: 2   VKLEPETFISVTHINKEQSPVKNADITKAIKTDERTSKEIKPGVPEFFNIQLNKVDVVKQ 181
           +KL P + I V   N    P  +  ++   K+D  T+K    G  +  + Q++++   K 
Sbjct: 10  IKLNPSSSIFVWGSNVSTCPAGDLALSMPGKSDVVTTKLTGAGSIDDLSTQMSRILSKKF 69

Query: 182 STNVVLTANVTPKKPDSPQTE 244
              V  + N+    P+ P+ +
Sbjct: 70  QAQVYTSINLQGDFPNDPEVQ 90


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 207 TLRRKSRTAPKRRKTKTASQQQNLNRT 287
           +  R++RTAP + K  TAS + N+ RT
Sbjct: 136 SFERQNRTAPLQSKVTTASLKPNIPRT 162


>SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 229

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +2

Query: 317 KAVESIIENSHIDVKLSPALSRKSIEKHSPAPQSPSTPKAFFKRKAGSVELQDXPE 484
           KA++   EN +       A SRK  EK     +S ST    ++R    ++L D PE
Sbjct: 140 KAIDDFYENFNDKRDKVIAKSRKEQEKLLEENESKSTGTTSWERILKLIDLSDKPE 195


>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/69 (23%), Positives = 31/69 (44%)
 Frame = +2

Query: 140 FFNIQLNKVDVVKQSTNVVLTANVTPKKPDSPQTEKDQDCFPAAEPKSNIPLRKDSFVAK 319
           F   +LN++  +       LTA     +  + +  K+        P   IP+++ S ++K
Sbjct: 112 FSRKELNRLQALVYKNKDGLTATSAASELKNTKQPKESYDVWETNPTVTIPVKRPSTLSK 171

Query: 320 AVESIIENS 346
             ES+ EN+
Sbjct: 172 LPESLTENN 180


>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 206 NVTPKKPDSPQTEKDQDCFPAAEPKSNIPLRKDS 307
           NV  +KP   +  K+   FP A+P S + L  +S
Sbjct: 244 NVARRKPAKIRETKEYTPFPPAQPPSKLDLEIES 277


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 444 LKKALGVEGLCGAGECFSIDFLDKAGDSL 358
           LKK LG     G G  F + ++ K GD L
Sbjct: 97  LKKKLGNSAGIGQGRAFKLGWIKKDGDKL 125


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +3

Query: 81  QKLS--RQTRGLQKKSSLVCQNSSTYS 155
           QKLS   Q+R  +KKS L+  NSS YS
Sbjct: 234 QKLSIKSQSRNSRKKSKLLSINSSCYS 260


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2

Query: 341 NSHIDVKLSPALSRKSIEKHSPAPQSPSTPKAF 439
           N H DV     L   S E H   P SP+   +F
Sbjct: 101 NPHADVSKIDRLPSDSSESHVATPSSPTISNSF 133


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 35  THINKEQSPVKNADITKAIKTDERTSKE 118
           T  N EQ P  N+ ITKA    + +  +
Sbjct: 369 TDTNNEQKPTNNSTITKATTLSDNSQND 396


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 8   LEPETFISVTHINKEQSPVKNADITKAIKT 97
           LEP+  + VT   K     K A+ITK I T
Sbjct: 95  LEPKNILVVTKPRKHSLVYKTAEITKYILT 124


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 393 SIDFLDKAGDSLTSM*EFSMMLSTAFATN 307
           S+DF+  AGD  T    F + L TAF+ +
Sbjct: 757 SVDFVFCAGDDKTDENMFEVFLPTAFSNS 785


>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
 Frame = +2

Query: 221  KPDSPQTEKDQDCFPAAEPKSNIPLRKDSFVAKAVESIIENSHIDVKLSPALSRKSIEKH 400
            +P S +    QD   ++ P   +P   ++  + A +S++ N  +  KL  ++ +  +E H
Sbjct: 876  RPVSQEAILSQDI--SSSPSPVLP-PSENVASYADDSLVSNLTMSPKLRDSMEQVPLENH 932

Query: 401  SPAPQSPSTPKAFFKRKAGSV-EL------QDXPEK 487
                 S    +  F    GSV E+      QD PEK
Sbjct: 933  REFEISDRVSELSFDSSTGSVLEIADTRRNQDAPEK 968


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 290 PLRKDSFVAKAVESIIENSHIDVKLSPALSRKSIEKHSPAPQSPSTPKAFFK 445
           PL+  +F  +     I+ + + V LS   S++++ +   +PQ  S  K F K
Sbjct: 594 PLKLSNFHGERTWQYIKPAPLAVDLSNLESKEAVSEEIQSPQRLSRSKVFRK 645


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/46 (32%), Positives = 18/46 (39%)
 Frame = +2

Query: 383 KSIEKHSPAPQSPSTPKAFFKRKAGSVELQDXPEKPRTNSLSTEGS 520
           K   K  P P S   P    + K  SV   +  E P T+ L   GS
Sbjct: 321 KEPAKPVPQPSSNEPPAPSAENKQPSVSSPEKKESPATHLLKVIGS 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,107,436
Number of Sequences: 5004
Number of extensions: 42155
Number of successful extensions: 192
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)