Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312G07f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41810.2 68418.m05091 expressed protein                             32   0.20 
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    31   0.36 
At5g41810.1 68418.m05090 expressed protein                             31   0.47 
At5g04020.1 68418.m00382 calmodulin-binding protein-related (PIC...    31   0.47 
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    30   0.82 
At5g65180.1 68418.m08198 expressed protein contains Pfam domain,...    29   2.5  
At5g03800.1 68418.m00347 exostosin family protein / pentatricope...    29   2.5  
At1g33050.1 68414.m04069 expressed protein                             29   2.5  
At2g24650.1 68415.m02944 transcriptional factor B3 family protei...    28   4.4  
At1g72960.1 68414.m08438 root hair defective 3 GTP-binding (RHD3...    28   4.4  
At5g61865.1 68418.m07761 expressed protein                             27   5.8  
At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contai...    27   5.8  
At5g41070.1 68418.m04992 double-stranded RNA-binding domain (DsR...    27   7.7  

>At5g41810.2 68418.m05091 expressed protein
          Length = 279

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 35/137 (25%), Positives = 60/137 (43%)
 Frame = +2

Query: 17  ETFISVTHINKEQSPVKNADITKAIKTDERTSKEIKPGVPEFFNIQLNKVDVVKQSTNVV 196
           ET   +    + Q   + AD +K I +   +S E+K  + E  N +  K +  K+ TN  
Sbjct: 44  ETMKILDGSRQNQDETRQAD-SKNIDSPSSSSLEMKKKL-EIENTK--KEEEKKKETNNN 99

Query: 197 LTANVTPKKPDSPQTEKDQDCFPAAEPKSNIPLRKDSFVAKAVESIIENSHIDVKLSPAL 376
             +N+  KK  S   +     + + E  S    + DS ++ +    +  SH+  +  P+L
Sbjct: 100 NLSNMKHKKTSSHVWDCGSTLYDSFELNS-FKRQLDSAISASSARTMSMSHLPDRRIPSL 158

Query: 377 SRKSIEKHSPAPQSPST 427
           S  S E   P P  P+T
Sbjct: 159 SSLSPEYSPPLPPPPTT 175


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
           identical to auxin transport protein; BIG [Arabidopsis
           thaliana] GI:21779966; contains Pfam profiles PF02207:
           Putative zinc finger in N-recognin, PF00569: Zinc finger
           ZZ type
          Length = 5098

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 13/30 (43%), Positives = 22/30 (73%)
 Frame = -3

Query: 153 CMLKNSGTPGLISFEVLSSVLIAFVMSAFL 64
           CML++ G PG ++FE+L ++L +  +S FL
Sbjct: 614 CMLQDEGRPGHVAFELLLNLLRSRALSDFL 643


>At5g41810.1 68418.m05090 expressed protein
          Length = 288

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 29/125 (23%), Positives = 49/125 (39%)
 Frame = +2

Query: 53  QSPVKNADITKAIKTDERTSKEIKPGVPEFFNIQLNKVDVVKQSTNVVLTANVTPKKPDS 232
           Q+  KN D   +   + +   EI             K +  K+ TN    +N+  KK  S
Sbjct: 61  QADSKNIDSPSSSSLEMKKKLEIDQKFTSQNEENTKKEEEKKKETNNNNLSNMKHKKTSS 120

Query: 233 PQTEKDQDCFPAAEPKSNIPLRKDSFVAKAVESIIENSHIDVKLSPALSRKSIEKHSPAP 412
              +     + + E  S    + DS ++ +    +  SH+  +  P+LS  S E   P P
Sbjct: 121 HVWDCGSTLYDSFELNS-FKRQLDSAISASSARTMSMSHLPDRRIPSLSSLSPEYSPPLP 179

Query: 413 QSPST 427
             P+T
Sbjct: 180 PPPTT 184


>At5g04020.1 68418.m00382 calmodulin-binding protein-related (PICBP)
            contains similarity to potato calmodulin-binding protein
            PCBP GI:17933110 from [Solanum tuberosum]
          Length = 1495

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +2

Query: 119  IKPGVPEFFNIQLNKVDVVKQSTNVVLTANVTPKKPDSPQTEKDQDCFPAAEPK 280
            ++  +     IQ  KVD++ Q+ ++VL  + TPK+  +  T ++ D     +P+
Sbjct: 919  LRQAISRLAPIQRKKVDLLVQAFDIVLDGHDTPKQTKNSDTPRNNDETKEGKPR 972


>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 25/77 (32%), Positives = 35/77 (45%)
 Frame = +2

Query: 206 NVTPKKPDSPQTEKDQDCFPAAEPKSNIPLRKDSFVAKAVESIIENSHIDVKLSPALSRK 385
           +V+P +P    +       PA+ P  + P R     A+  +S    SH     +PALS  
Sbjct: 144 SVSPTQPPKSHSPVSPVA-PASAPSKSQPPRSSVSPAQPPKSSSPISH-----TPALSPS 197

Query: 386 SIEKHSPAPQSPSTPKA 436
               HSPA  SPS PK+
Sbjct: 198 HATSHSPATPSPS-PKS 213


>At5g65180.1 68418.m08198 expressed protein contains Pfam domain,
           PF04818: Protein of unknown function, DUF618
          Length = 439

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 390 LKNILRRHRAPPLLKLSSKEKRGASNSKTNQRNPEPTL 503
           LK+++    APP L +S K  RG+ ++K + ++ +  L
Sbjct: 125 LKDVMLSEEAPPPLDVSKKRFRGSKSAKRDSKSTKTKL 162


>At5g03800.1 68418.m00347 exostosin family protein / pentatricopeptide
            (PPR) repeat-containing protein contains Pfam profiles:
            PF03016 exostosin family, PF01535 PPR repeat
          Length = 1388

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 149  IQLNKVDVVKQSTNVVLTANVTPKK 223
            IQLN ++V   S NV  TA++ PKK
Sbjct: 977  IQLNMINVTATSNNVSSTASLEPKK 1001


>At1g33050.1 68414.m04069 expressed protein
          Length = 693

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
 Frame = +2

Query: 161 KVDVVKQSTNV-----VLTANVTPKKPDSPQTEKDQDCFPAAEPKSNIPLRKDSFVAKAV 325
           K+DV K  T +     +LT     +  DSP  E + D   +     N+ ++ +S      
Sbjct: 516 KMDVKKLLTTMHGLSELLTLAHGSESSDSPNAE-ELDLINSTVQNLNLYIQNNSQEHAGN 574

Query: 326 ESIIENSHIDVKLSPALSRKSIEKHSPAPQSPSTPKAFFKRK 451
           +S+ + +  D+KL P  S+ SI  H     +  T     KRK
Sbjct: 575 QSVAQYNSYDLKLLPNKSKLSIRDHQFPTANNMTVDLDVKRK 616


>At2g24650.1 68415.m02944 transcriptional factor B3 family protein low
            similarity to reproductive meristem gene 1 from [Brassica
            oleracea var. botrytis] GI:3170424, [Arabidopsis
            thaliana] GI:13604227; contains Pfam profile PF02362: B3
            DNA binding domain
          Length = 1440

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 151  TVKQSGCC*AEY*RCFDRERYAEKAGQPPNGE 246
            T+    CC  +Y  C D ER  EK  + PNGE
Sbjct: 1040 TMLGPSCCEIQYGSCSDEERNLEKK-KNPNGE 1070


>At1g72960.1 68414.m08438 root hair defective 3 GTP-binding (RHD3)
           family protein contains Pfam profile: PF05879 root hair
           defective 3 GTP-binding protein (RHD3)
          Length = 748

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 369 LPCPENLLKNILRRHRAPPLLKLSSKEKRGASNSKTNQRNPEPTLXAPKE 518
           +P   NL+KN+  +   PP    ++ E R +SN+ ++  NP     + KE
Sbjct: 701 VPTVMNLIKNLAAQGEDPP---AANPENRRSSNNTSSSENPPDHKSSSKE 747


>At5g61865.1 68418.m07761 expressed protein
          Length = 417

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +1

Query: 256 LLPSS-RT*IEHSVKKRLVRSEGSREHH*EL 345
           LLP+S +   EHS+  + + +EGSREH  +L
Sbjct: 315 LLPASQKKQAEHSITGKRIGTEGSREHEEKL 345


>At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contains
           Pfam domains PF00628: PHD-finger and PF00855: PWWP
           domain; identical to cDNA trithorax 3 (ATX3) partial cds
           GI:15217142
          Length = 799

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 224 PDSPQTEKDQDCFPAAEPKSNIPLR 298
           PDS  TE DQD  PA+  ++ +PL+
Sbjct: 299 PDSSATESDQDYGPASRFQALMPLK 323


>At5g41070.1 68418.m04992 double-stranded RNA-binding domain
           (DsRBD)-containing protein contains Pfam profile
           PF00035: Double-stranded RNA binding motif
          Length = 393

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +3

Query: 108 LQKKSSLVCQNSSTYS*TKWMLLSRVLTLF*PRTLRRKSRTAPKRRKTKTASQQQNL 278
           L+K SSL  Q+       +   ++RVL+ F P+ +RR+  T   RR+T      ++L
Sbjct: 153 LKKMSSLDSQDEEK----EQEAVARVLSRFKPKEVRRRETTNQWRRRTSQQDSNKDL 205


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,110,372
Number of Sequences: 28952
Number of extensions: 224989
Number of successful extensions: 834
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)