Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312G06f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 312 2e-86
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 312 3e-86
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 312 3e-86
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 178 4e-46
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 178 4e-46
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 103 2e-23
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 53 3e-08
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 45 6e-06
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 44 1e-05
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 42 7e-05
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 37 0.002
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 37 0.002
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 35 0.006
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 31 0.10
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.18
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 30 0.24
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 29 0.32
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 1.3
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 27 2.2
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 26 3.9
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 3.9
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 25 6.8
SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.0
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 312 bits (766), Expect = 2e-86
Identities = 147/172 (85%), Positives = 159/172 (92%)
Frame = +3
Query: 6 GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITI 185
GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKAERERGITI
Sbjct: 14 GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERERGITI 73
Query: 186 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 365
DIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+GQT
Sbjct: 74 DIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQT 133
Query: 366 REHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYXP 521
REHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G+ P
Sbjct: 134 REHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVGFNP 183
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 312 bits (765), Expect = 3e-86
Identities = 146/172 (84%), Positives = 159/172 (92%)
Frame = +3
Query: 6 GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITI 185
GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKAERERGITI
Sbjct: 14 GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERERGITI 73
Query: 186 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 365
DIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQT
Sbjct: 74 DIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQT 133
Query: 366 REHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYXP 521
REHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G+ P
Sbjct: 134 REHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVGFNP 183
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 312 bits (765), Expect = 3e-86
Identities = 146/172 (84%), Positives = 159/172 (92%)
Frame = +3
Query: 6 GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITI 185
GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKAERERGITI
Sbjct: 14 GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERERGITI 73
Query: 186 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 365
DIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQT
Sbjct: 74 DIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQT 133
Query: 366 REHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYXP 521
REHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G+ P
Sbjct: 134 REHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVGFNP 183
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 178 bits (434), Expect = 4e-46
Identities = 87/171 (50%), Positives = 114/171 (66%), Gaps = 1/171 (0%)
Frame = +3
Query: 6 GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITI 185
GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD + ER RG+T+
Sbjct: 184 GHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTM 243
Query: 186 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 365
D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE G +NGQT
Sbjct: 244 DVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQT 303
Query: 366 REHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY-IKKIGY 515
REHA L LG+ +++V VNK+D +SE RF+EIK VS + IK +G+
Sbjct: 304 REHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMVGF 352
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 178 bits (434), Expect = 4e-46
Identities = 80/171 (46%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
Frame = +3
Query: 6 GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITI 185
GHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD ERE+G T+
Sbjct: 245 GHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTV 304
Query: 186 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 365
++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG + GQT
Sbjct: 305 EVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQT 364
Query: 366 REHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKI-GY 515
REHA+LA T G+ L+V +NKMD +SE R++E ++S +++++ GY
Sbjct: 365 REHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGY 415
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 103 bits (246), Expect = 2e-23
Identities = 64/164 (39%), Positives = 91/164 (55%)
Frame = +3
Query: 6 GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITI 185
GHVD GK+T T I KC ++G+ SF +DK E+ RGITI
Sbjct: 60 GHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDKAPEEKARGITI 104
Query: 186 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 365
A ++ET+ + +D PGH D+IKNMITG + D A+++V+A G+ QT
Sbjct: 105 SSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP-------QT 157
Query: 366 REHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY 497
REH LLA +GVKQ++V +NK+D EP E E+++ +S Y
Sbjct: 158 REHLLLARQVGVKQIVVYINKVDMVEPDMIELVEMEMRELLSEY 201
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 52.8 bits (121), Expect = 3e-08
Identities = 46/142 (32%), Positives = 66/142 (46%)
Frame = +3
Query: 9 HVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITID 188
H+D+GK+T T ++Y G F + G V+D L AER+RGITI+
Sbjct: 36 HIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGDT----VMDYLPAERQRGITIN 82
Query: 189 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 368
A F + +ID PGH DF + + D AV I+ + AG+ QT+
Sbjct: 83 SAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAII-----DGSAGV--EAQTK 135
Query: 369 EHALLAFTLGVKQLIVGVNKMD 434
A G+ ++I VNKMD
Sbjct: 136 VVWKQATKRGIPKVIF-VNKMD 156
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 45.2 bits (102), Expect = 6e-06
Identities = 44/141 (31%), Positives = 64/141 (45%), Gaps = 19/141 (13%)
Frame = +3
Query: 9 HVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITID 188
H+DSGK+T T ++Y G I K+ E+ +G +D ++ ERE+GITI
Sbjct: 67 HIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELEREKGITIQ 116
Query: 189 IAL----WK---------------FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 311
A W+ FE S Y + IID PGH DF + D AVL+
Sbjct: 117 SAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLV 175
Query: 312 VAAGTGEFEAGISKNGQTREH 374
+ A +G I+ + Q R +
Sbjct: 176 LCAVSGVQSQTITVDRQMRRY 196
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 44.0 bits (99), Expect = 1e-05
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +3
Query: 144 LDKLKAERERGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 311
LDKL+ ER RGIT+ ++ + Y + +ID PGH DF ++ + + +L+
Sbjct: 95 LDKLEVERRRGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILL 154
Query: 312 VAAGTG 329
V A G
Sbjct: 155 VDASQG 160
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 41.5 bits (93), Expect = 7e-05
Identities = 23/93 (24%), Positives = 42/93 (45%)
Frame = +3
Query: 222 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 401
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 402 KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI 500
K +I+ NK+D +E ++ I K + +
Sbjct: 163 KHIIILQNKVDLIRESAAEEHYQSILKFIKGTV 195
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 36.7 bits (81), Expect = 0.002
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Frame = +3
Query: 9 HVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYAWVLDKLKAERERGI 179
HVD GKST T L+ K G I K +F + A E +G + + L AE
Sbjct: 27 HVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKSTAIS-LFAEMTDDD 85
Query: 180 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 314
D+ + + + V +ID+PGH DF + D A+++V
Sbjct: 86 MKDMKE-PADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 36.7 bits (81), Expect = 0.002
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Frame = +3
Query: 9 HVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYAWVLDKLKAERERGI 179
HVD GKST T L+ K G I K +F + A E +G + + L AE
Sbjct: 27 HVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKSTAIS-LFAEMTDDD 85
Query: 180 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 314
D+ + + + V +ID+PGH DF + D A+++V
Sbjct: 86 MKDMKE-PADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 35.1 bits (77), Expect = 0.006
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +3
Query: 114 GKGSFKYAWVLDKLKAERERGITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTS 287
GK + A+ + + GIT I + F+ ++T +D PGH F G +
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGAN 242
Query: 288 QADCAVLIVAAGTG 329
AD VL+VA G
Sbjct: 243 IADIVVLVVAGDDG 256
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 31.1 bits (67), Expect = 0.10
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Frame = +3
Query: 6 GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA--QEMGKGSFKYAWVLDKLKAERERGI 179
GHVD+GK+ +L + +++ E Q++G F + K K ++G
Sbjct: 491 GHVDTGKTKLLDNL-------RRSNVQEGEAGGITQQIGATYFPIESIKQKTKVVNKKG- 542
Query: 180 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 314
K + + + IID PGH F GTS + A+L++
Sbjct: 543 -------KLQYNIPGLLIIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.18
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 219 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 329
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.9 bits (64), Expect = 0.24
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +3
Query: 147 DKLKAER-ERGITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 269
+K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 29.5 bits (63), Expect = 0.32
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 184 IVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIPPH 56
I IP+ A S+ N++ + +D LP + S V+L +P H
Sbjct: 171 IPIPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 162 ERERGITID-----IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 314
ERER ++I +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 185 ERERVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 208 SNFQRAISIVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMV 77
S F IS+ +P FSL+ ++ K LPI W S + S V
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -3
Query: 153 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSNDQWWWT 25
V +PK I I++ F P S S C+Y S+D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 174 HAHAQPLVCPIPKHI*RILYPFPGPPSRTSRWY 76
H+H PL P+P +L P P P S WY
Sbjct: 135 HSHHPPLHNPLPVSCQPVLRP-PPVPQVPSHWY 166
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 108 PGPPSRTSRWYVCQYHHIC 52
P PP +T + Y QY+ +C
Sbjct: 8 PAPPKKTLQLYTPQYYGLC 26
>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 96
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 278 CDHVLDEISVSRSINDGNIVLASFEL 201
CDH+L IS SR G + FEL
Sbjct: 23 CDHLLQYISNSRDSKAGLKIFLVFEL 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,196,855
Number of Sequences: 5004
Number of extensions: 44237
Number of successful extensions: 159
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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