Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312G02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    30   0.18 
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    29   0.32 
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   3.9  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    25   5.2  
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    25   5.2  
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    25   9.0  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   9.0  

>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 15/64 (23%), Positives = 33/64 (51%)
 Frame = +2

Query: 65  NFWKMSYIKVKQEESSTQTQEIKNAPRKAKLRXDVKVLKQKLKSREIVIVNIKSILDLLK 244
           + W M Y+   +    T+    +NA R+++L+ +++  +++LK     + N K I  + K
Sbjct: 211 DIWNMKYLPKFKWHHLTEQIAAENAARESRLKVEIEQGRKQLKQYMRNVENAKMIEGIRK 270

Query: 245 KNGD 256
           K  +
Sbjct: 271 KRSE 274


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 15/47 (31%), Positives = 29/47 (61%)
 Frame = +2

Query: 86  IKVKQEESSTQTQEIKNAPRKAKLRXDVKVLKQKLKSREIVIVNIKS 226
           IK ++EE   Q  EI+   R+++L+ + +  K+  K  E++I N+K+
Sbjct: 358 IKAQEEERKRQA-EIEKEIRQSRLQEEERKKKKLAKYTEVIISNLKA 403


>SPCC18.03 |||shuttle craft like transcriptional
            regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = +3

Query: 57   DVGISGKCPI*RSNKRNQVLKRKK*KMPREKQNY 158
            D GI+ +C I   N +N+++K +  ++  +K+ +
Sbjct: 1022 DAGIASRCEICEINDKNEIVKTRSQRIHSKKKAF 1055


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 79  HFPEIPTSYLLEDPPR 32
           HF  I TSYL E PP+
Sbjct: 785 HFQAIITSYLCESPPK 800


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 17/70 (24%), Positives = 31/70 (44%)
 Frame = +2

Query: 86  IKVKQEESSTQTQEIKNAPRKAKLRXDVKVLKQKLKSREIVIVNIKSILDLLKKNGDF*L 265
           ++VK  E   + +  K   +  + R  V   ++  K ++    N+K   +LL  N +   
Sbjct: 5   LRVKLSEEQRKLKAEKERAKIEEYRGLVSRFQEARKRKDYSEGNLKLTTELLDWNPETYS 64

Query: 266 XWNLNCEILM 295
            WN   EIL+
Sbjct: 65  VWNYRREILL 74


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/34 (23%), Positives = 20/34 (58%)
 Frame = +2

Query: 65  NFWKMSYIKVKQEESSTQTQEIKNAPRKAKLRXD 166
           N W    + V++ +S+T+   +KNA   ++++ +
Sbjct: 21  NMWGNEAVSVEKTDSTTKPSTVKNAISSSQIKNE 54


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 98  QEESSTQTQEIKNAPRKAKLRXDVKVLKQKLKS 196
           ++ +++Q  E  N P KAK++ + KV + K KS
Sbjct: 455 KKTANSQATENNNTPSKAKVKAESKV-RSKAKS 486


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,728,450
Number of Sequences: 5004
Number of extensions: 29770
Number of successful extensions: 76
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)