Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312G02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0143 + 17670103-17670430,17670511-17670785,17670897-176713...    28   4.0  
09_02_0157 + 5083771-5083996,5084007-5084326,5085958-5086392,508...    27   6.9  

>03_04_0143 +
           17670103-17670430,17670511-17670785,17670897-17671376,
           17671454-17671849,17673215-17673289,17673939-17673960,
           17674041-17674129,17675204-17675495,17676019-17676087,
           17676394-17676572
          Length = 734

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -1

Query: 263 IKNRHFSLINLKSTLYLQSLFRDF*VFVSKP*HLVVILLFSGHFLFLAF 117
           IK + + L+  K  L L SL  DF     +P  +VV    S H L++ F
Sbjct: 552 IKEKVWKLLGEKEELELSSLSHDFRRLNLEPKEIVVATFSSSHNLWICF 600


>09_02_0157 +
           5083771-5083996,5084007-5084326,5085958-5086392,
           5087277-5087921
          Length = 541

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = +3

Query: 15  CLTSSERGGSSSKYDVGISGKC---PI*RSNKRNQ 110
           C+T+   GG    YD+G+SG C    I +SNKR +
Sbjct: 28  CITAG-MGGVIFGYDIGVSGACLQLQIGQSNKRGK 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,836,295
Number of Sequences: 37544
Number of extensions: 149502
Number of successful extensions: 286
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)