Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312G02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016681-3|AAB66173.1|  159|Caenorhabditis elegans Hypothetical ...    31   0.50 
AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical ...    28   3.5  
AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical ...    28   3.5  
Z73102-13|CAA97405.1|  836|Caenorhabditis elegans Hypothetical p...    28   4.7  

>AF016681-3|AAB66173.1|  159|Caenorhabditis elegans Hypothetical
           protein F22E5.9 protein.
          Length = 159

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
 Frame = +2

Query: 71  WKMSYIKVKQEESSTQTQE-----IKNAPRKAKLRXDVKVLKQKLKSREIVIVNIKSILD 235
           WK  Y  +K    +  + E     +KNA  K +   D  V K+KL +        KS+ D
Sbjct: 7   WKKCYDSIKTVAKTVPSAEDSMKGVKNAASKMRAGVDEIVEKRKLYAESETAKLKKSLKD 66

Query: 236 LLKKNGDF*LXWNLN 280
           L K+N D  +  NLN
Sbjct: 67  LSKENSDLKMQ-NLN 80


>AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical
            protein Y38E10A.6b protein.
          Length = 1345

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +2

Query: 86   IKVKQEESSTQTQEIKNAPRKAKLRXDVKVLKQK 187
            I  K E++  + QEI+ +P+K++ R +++ + QK
Sbjct: 954  IPKKSEKAPEKPQEIEKSPKKSEKRQEIQEIPQK 987


>AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical
            protein Y38E10A.6a protein.
          Length = 1343

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +2

Query: 86   IKVKQEESSTQTQEIKNAPRKAKLRXDVKVLKQK 187
            I  K E++  + QEI+ +P+K++ R +++ + QK
Sbjct: 952  IPKKSEKAPEKPQEIEKSPKKSEKRQEIQEIPQK 985


>Z73102-13|CAA97405.1|  836|Caenorhabditis elegans Hypothetical
           protein B0035.12 protein.
          Length = 836

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 155 LRXDVKVLKQKLKSREIVIVNIKSILDLLKKNGDF 259
           L  +++ +KQK+      +V    +L LL+KNGDF
Sbjct: 18  LDEEIQKIKQKMIDDSQSVVLANQLLILLRKNGDF 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,185,020
Number of Sequences: 27780
Number of extensions: 156963
Number of successful extensions: 374
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)