Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312F12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811           29   2.3  
05_03_0667 + 16781857-16782001,16784506-16784544,16785229-167859...    28   4.0  
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881...    28   4.0  
03_05_0884 - 28487013-28487271,28487355-28487516,28487594-284878...    27   6.9  
03_01_0436 + 3384526-3385236,3387857-3388720                           27   9.1  

>08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811
          Length = 359

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 116 NCCRQAKVPAHLCSVDEDCETRMRVLAENGYG 21
           +CC Q KV   L S +ED E  +R +  +GYG
Sbjct: 5   SCCNQQKVKRGLWSPEED-EKLIRYITTHGYG 35


>05_03_0667 +
           16781857-16782001,16784506-16784544,16785229-16785910,
           16786003-16786087,16786747-16786888,16787391-16787575,
           16788011-16788143,16788317-16788405,16788530-16788604,
           16789060-16789173,16789264-16789305
          Length = 576

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 216 ARGVLHSYFFSWEHAPT-RSLEVDWLDARNICRRHCMDAVSLETPQENEFV 365
           A G  H    S  H  +  S++ D+LDA+++  R  +D V+   P E   +
Sbjct: 108 AEGFSHMLISSLRHLKSVESVQKDFLDAKHLAARLILDIVASIVPHEERIL 158


>02_02_0307 -
           8809724-8811589,8811681-8811762,8812130-8812242,
           8812361-8812492,8812681-8812864,8813002-8813135,
           8813552-8813656,8813738-8813839,8813930-8814022,
           8814136-8814456,8814595-8814696,8814791-8814853,
           8815213-8815708,8815964-8816124,8816213-8816743,
           8817077-8817118,8817203-8817334,8817639-8817703,
           8817858-8818169,8818262-8818334,8818425-8818517,
           8819440-8819501,8819740-8819809
          Length = 1777

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 331 TASMQCLRQMFLASSQSTSKLRVGACSQLKKYECSTPRASRYVEW 197
           +  +Q L+     S  ST+ +R      L+K EC  PR +R + W
Sbjct: 527 SGGVQRLQSSPQESEYSTNFVRKIMTDSLQKLECEAPRETRPIRW 571


>03_05_0884 -
           28487013-28487271,28487355-28487516,28487594-28487802,
           28488490-28488630,28488876-28489071,28489207-28489379,
           28490095-28490142,28490301-28490378,28490526-28490792,
           28491689-28491842,28491928-28492064,28492459-28492536,
           28493039-28493216,28493589-28493803,28494063-28494422,
           28494497-28494973,28495561-28495665,28495838-28496020,
           28496105-28496263,28496937-28497154,28497737-28497905,
           28498262-28498568,28498699-28498826,28498902-28499060,
           28499194-28499364,28500258-28500376,28500604-28500853,
           28501007-28501759
          Length = 1950

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 4   QSSTRPP*PFSASTRIRVSQSSSTLQR*AGTFAWRQQFC 120
           QS+  P  P S S     S S+  LQ  +G + W  ++C
Sbjct: 578 QSNQTPAKPVSTSLNTMESISAIALQAVSGPYMWNSEWC 616


>03_01_0436 + 3384526-3385236,3387857-3388720
          Length = 524

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 19/52 (36%), Positives = 22/52 (42%)
 Frame = +1

Query: 100 AWRQQFCSRHYASLRPRDV*LYQIPGVVPTEYAIRHTAMHGEYYIRISLAGN 255
           AW     +  YA  RPR V L  + G  P   A  H A   E   R  LAG+
Sbjct: 68  AWCCAAAAYAYAMSRPRPVYLVDLAGYKP---AASHEATRAESIRRFGLAGD 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,450,012
Number of Sequences: 37544
Number of extensions: 359103
Number of successful extensions: 968
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)