Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312F12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          27   0.088
AB264336-1|BAF44091.1|   21|Apis mellifera ecdysone-induced prot...    25   0.47 
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   1.9  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   1.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   3.3  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   3.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   3.3  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   5.8  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 27.5 bits (58), Expect = 0.088
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +3

Query: 243 FSWEHAPTRSLEVDWLDARNICRRHCMDAVSLETPQEN 356
           ++WEH  T    +DW      C      AV LET Q N
Sbjct: 188 YNWEHKETH---IDWQPEDEECTEATAGAVVLETCQRN 222


>AB264336-1|BAF44091.1|   21|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 21

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -3

Query: 225 LPVHRGMSNGVLGWHNS 175
           LP+ +G+ NGV+ +HN+
Sbjct: 5   LPILKGILNGVVNYHNA 21


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 307 QMFLASSQSTSKLRV 263
           +MFL S Q TSKL++
Sbjct: 79  RMFLISQQKTSKLKI 93


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 307 QMFLASSQSTSKLRV 263
           +MFL S Q TSKL++
Sbjct: 62  RMFLISQQKTSKLKI 76


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 447 DLQPPNVNGWFWSXF 491
           D+   NVN W W+ F
Sbjct: 63  DVAYNNVNNWLWTPF 77


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +2

Query: 8   AARARRSRSPQVRASVFHSLHQHYRDEPALLPGGSS 115
           AAR   S  P V A+  H  HQ  +   A   G +S
Sbjct: 81  AARTTSSMYPYVSAAAAHHHHQQQQAVAAAAFGATS 116


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 68  HQHYRDEPALLPGGSSFV 121
           H HYR  P L    SS+V
Sbjct: 363 HLHYRQPPTLSESYSSYV 380


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = -3

Query: 285 NPLLSCVLEHVPS*RNTNVVLPVHRG--MSNGVLGWHNSWDLVKLDVSGPQRSIVPRTKL 112
           N +LS +L+       T V    + G  M N +  +    D  ++D  GP     PRTK 
Sbjct: 303 NGMLSHILQKTTLNMLTQVECYKYYGNIMVNAMCAYAKGKDACQMDSGGPVLWQNPRTKR 362

Query: 111 L 109
           L
Sbjct: 363 L 363


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,888
Number of Sequences: 438
Number of extensions: 3873
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)