Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312F10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar...    27   1.7  
SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces pom...    27   2.2  
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    25   6.8  
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom...    25   6.8  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    25   6.8  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.0  

>SPAC4A8.13c |pts1||20S proteasome component beta
           5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 159 YLLLNMNIWTILLMFNYTHGATVLKKPSSSAG 254
           + L+ MN  T  L F Y HG  V     +SAG
Sbjct: 53  HCLIKMNHGTTTLAFRYQHGIVVCVDSRASAG 84


>SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 192 LLMFNYTH--GATVLKKPSSSAGWRCSVT*PSLSTSRSRMFTPSK 320
           L +FN +H     V  + S   GW+   T P+L  ++ +++TP K
Sbjct: 198 LEVFNISHVKNPMVFLRNSVLKGWKVIGTKPALPDNKDQIYTPHK 242


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 197 DVQLHAWGDSLKEAFEQCGMAMFGYM-TELEYVQIKDVHTIEASA 328
           DV + A+G  +K+  + C M + G+   +   + +   HT+   A
Sbjct: 75  DVDISAYGIEIKKVIDPCDMEISGFCPMQTGNIALSGSHTLTGEA 119


>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
 Frame = +2

Query: 32  IINEGSEVRVFVRKHIY**NFVTLLKTIMDEELGGISEEYYDIPPVKYEYLDHTADVQLH 211
           ++N   E R F     Y  N  T LKT+MD+  G   +E   +  V   ++    D+  H
Sbjct: 61  VVNANHENRPFRDLEGYHFNTFTFLKTLMDK--GYTEKEAEGLLEVTNMFV---TDMLRH 115

Query: 212 AWGDSLKEA-FEQCGMAMFGYMTELEYVQI 298
           +  + L EA FE C       ++EL   +I
Sbjct: 116 SHLNYLSEADFENCSYLFRTALSELRSEKI 145


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 218 PMRVIEHQ-QYGPNIHI*QEVYHNILRKYRLI 126
           P R +EH  Q   +  +  +VYHN+L+ +  +
Sbjct: 160 PKRRLEHLLQQAKDYQVSSQVYHNVLKNFSFL 191


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +3

Query: 219 ATVLKKPSSSAGWRCSVT*PSLSTSRSRMFTPSKRALTISWDYFTTSSTN 368
           +T+    SSS+ +  +++  S+S+S S   +P+  + TIS    + SS++
Sbjct: 305 STISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSS 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,989,521
Number of Sequences: 5004
Number of extensions: 37285
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)