Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312F09f
         (421 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...   151   6e-38
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...   146   2e-36
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    29   0.39 
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    25   3.6  
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    25   3.6  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   4.8  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score =  151 bits (365), Expect = 6e-38
 Identities = 71/112 (63%), Positives = 88/112 (78%), Gaps = 3/112 (2%)
 Frame = +2

Query: 2   RNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLP 181
           RN GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY  + +P
Sbjct: 6   RNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYSEYTIP 65

Query: 182 KLYAKLHYCVSCAIHSKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 328
           KLY KL YCVSCAIHS+VVR RS++ RRIRT PP+  + RD  +  P AV +
Sbjct: 66  KLYIKLQYCVSCAIHSRVVRVRSREGRRIRTPPPRVRYNRDGKKVNPTAVAK 117


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score =  146 bits (353), Expect = 2e-36
 Identities = 68/112 (60%), Positives = 87/112 (77%), Gaps = 3/112 (2%)
 Frame = +2

Query: 2   RNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLP 181
           RN GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY  + +P
Sbjct: 6   RNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYSEYAIP 65

Query: 182 KLYAKLHYCVSCAIHSKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 328
           K+Y KL YCVSCAIH++VVR RS++ RRIRT PP+  + RD  R  P A+ +
Sbjct: 66  KIYVKLQYCVSCAIHARVVRVRSREGRRIRTPPPRVRYNRDGKRVNPAAIAK 117


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 28.7 bits (61), Expect = 0.39
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +2

Query: 68  RCVPKDKAIKKFVIRNIVEAAAVRDI 145
           RCVPKDKAI   + +NI  A  VRD+
Sbjct: 20  RCVPKDKAILNPLAKNI--ADVVRDL 43


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = -1

Query: 127 RFYDVPNHELFDGLVLWHAPRAVCASHGFNVTTSMLGASS 8
           + +DV + +L + + L   P+A+C  +  ++ TS++  SS
Sbjct: 115 KVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSS 154


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 234 LSGTDRRKTEESVLLPRVTSLGT 302
           ++  DR +TE SVL  RVT +G+
Sbjct: 1   MAAVDRSRTEISVLSDRVTDVGS 23


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 206 CVSCAIHSKVVRNRSKKDRRIRTPPKS 286
           C SC+   K   N+  + RR++  PKS
Sbjct: 142 CGSCSDSKKPQSNKKHRGRRVKHSPKS 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,524,591
Number of Sequences: 5004
Number of extensions: 24950
Number of successful extensions: 55
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)