Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312F06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77666-12|CAJ43911.2|  896|Caenorhabditis elegans Hypothetical p...    28   3.5  
Z77666-9|CAJ43912.1|  541|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z77666-8|CAJ43910.1|  493|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AC024775-2|AAK68456.1|  452|Caenorhabditis elegans Hypothetical ...    27   6.2  
Z35641-2|CAA84707.2|  389|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF269063-1|AAG36940.1|  389|Caenorhabditis elegans core1 UDP-gal...    27   8.1  

>Z77666-12|CAJ43911.2|  896|Caenorhabditis elegans Hypothetical
           protein K08E7.5c protein.
          Length = 896

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = -2

Query: 259 ESSFHQQQPSLDMAHYHQLMCP*QPVKCGTASPPLGCTVCWVPLLIPKTC 110
           +  F Q QP    + Y Q  C  QP      +PP  C +  +P   P  C
Sbjct: 617 QQPFQQYQPQYPQS-YQQPSCGCQPQPQNCCAPPAPCCLPTIPCCPPIPC 665


>Z77666-9|CAJ43912.1|  541|Caenorhabditis elegans Hypothetical
           protein K08E7.5d protein.
          Length = 541

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = -2

Query: 259 ESSFHQQQPSLDMAHYHQLMCP*QPVKCGTASPPLGCTVCWVPLLIPKTC 110
           +  F Q QP    + Y Q  C  QP      +PP  C +  +P   P  C
Sbjct: 262 QQPFQQYQPQYPQS-YQQPSCGCQPQPQNCCAPPAPCCLPTIPCCPPIPC 310


>Z77666-8|CAJ43910.1|  493|Caenorhabditis elegans Hypothetical
           protein K08E7.5b protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = -2

Query: 259 ESSFHQQQPSLDMAHYHQLMCP*QPVKCGTASPPLGCTVCWVPLLIPKTC 110
           +  F Q QP    + Y Q  C  QP      +PP  C +  +P   P  C
Sbjct: 214 QQPFQQYQPQYPQS-YQQPSCGCQPQPQNCCAPPAPCCLPTIPCCPPIPC 262


>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical protein
            K08E7.5a protein.
          Length = 1221

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = -2

Query: 259  ESSFHQQQPSLDMAHYHQLMCP*QPVKCGTASPPLGCTVCWVPLLIPKTC 110
            +  F Q QP    + Y Q  C  QP      +PP  C +  +P   P  C
Sbjct: 942  QQPFQQYQPQYPQS-YQQPSCGCQPQPQNCCAPPAPCCLPTIPCCPPIPC 990


>AC024775-2|AAK68456.1|  452|Caenorhabditis elegans Hypothetical
           protein Y41D4A.6 protein.
          Length = 452

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 215 LSPVDVSIAACEMWNGFSTTWVYRLLGSIINPQNMLIV 102
           L+P  +++  C + NG STT   ++L     P N  IV
Sbjct: 40  LNPFPIAVKDCFLTNGTSTTCASQMLEKYTPPVNATIV 77


>Z35641-2|CAA84707.2|  389|Caenorhabditis elegans Hypothetical
           protein C38H2.2 protein.
          Length = 389

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 162 HHLGVPFVGFHY*SPKHVD 106
           HH  +PFV  H+ SP HVD
Sbjct: 283 HHRFMPFVPEHHLSPGHVD 301


>AF269063-1|AAG36940.1|  389|Caenorhabditis elegans core1
           UDP-galactose:N-acetylgalactosamine-alpha-R beta
           1,3-galactosyltransferase protein.
          Length = 389

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 162 HHLGVPFVGFHY*SPKHVD 106
           HH  +PFV  H+ SP HVD
Sbjct: 283 HHRFMPFVPEHHLSPGHVD 301


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,619,399
Number of Sequences: 27780
Number of extensions: 216913
Number of successful extensions: 456
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)