Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312F05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   1.3  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    27   1.3  
SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|ch...    27   1.7  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    26   3.9  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    25   6.8  
SPBC16A3.16 |||mitochondrial inner membrane protein involved in ...    25   9.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 279 IQIRLQPIWWQSPSAFR 229
           +Q+R+QPIWW    A R
Sbjct: 175 VQLRIQPIWWMDEFAER 191


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = +3

Query: 108 ESKTLRPTMSKESDRLPCYLQRKLRRIQHLRIVEAKKMQKNEMRKDF--ATKLVVNVFEF 281
           ES + R T   +S      ++ K  R+QH+R+ + K  Q +E R       + +VN ++ 
Sbjct: 553 ESHSKRTTQQPKSTPNHTNIKVKSERLQHVRMAQQKAEQLDEERSRLREPVQQIVNKWKE 612

Query: 282 SN*TNNPLLCRFITVVYW 335
              +N   L   +  + W
Sbjct: 613 GKESNLRALLASLDTILW 630


>SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 232

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 43  NYHSDFKEAKDSLRSALRDQCQKVKRCV 126
           NY    K AK++ +    +Q QK+++C+
Sbjct: 159 NYPKFLKNAKETEKQGFEEQYQKIQKCI 186


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/54 (24%), Positives = 30/54 (55%)
 Frame = +3

Query: 75  QPSFCSQRPMPESKTLRPTMSKESDRLPCYLQRKLRRIQHLRIVEAKKMQKNEM 236
           QPS   Q P P++    P+++  +  +  + Q +L + Q+L   + +K++++ M
Sbjct: 256 QPSLVPQMPYPQNGMYNPSVAPPASLVNLFQQEQLIQNQNLD-EKRQKLERDHM 308


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
 Frame = -3

Query: 195 NVEFVVTFFADNRAIYLILLTL*DA--AFYFLAL---VSESRTKAVFRLFEIGMVV 43
           N+  ++TFF DN   YL+          F ++ L   +SE  +KA+F  F+I + V
Sbjct: 571 NIVKMITFFEDNENYYLLTEPQKPGIDLFDYIELKPSISEKESKAIF--FQIALAV 624


>SPBC16A3.16 |||mitochondrial inner membrane protein involved in
           cytochrome c oxidase assembly Pet191
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 85

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +1

Query: 70  KDSLRSALRDQCQKVKR-CVLQCQKNQIDCPVICKESYDEFNIC 198
           +D     L   C  VK+    +C KN+ + P  CK   + +  C
Sbjct: 10  EDLANCLLHSDCMFVKKKSARECLKNKDELPEECKNLIEAYGEC 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,169,688
Number of Sequences: 5004
Number of extensions: 43975
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)