Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312F05f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0048 + 335868-336682,338382-340386                               33   0.18 
06_03_0608 + 22705321-22705652,22705809-22706178,22706264-227066...    32   0.24 
05_07_0352 - 29475855-29476330,29476421-29477165,29477689-294780...    32   0.24 
02_05_0225 + 26951993-26952165,26953169-26953567,26953644-269537...    28   4.0  
12_02_0760 - 22888636-22889407,22889503-22889769,22890001-228903...    28   5.2  
07_03_1564 + 27749899-27750166,27750431-27750507,27750923-277509...    27   6.9  

>08_01_0048 + 335868-336682,338382-340386
          Length = 939

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 7   MFFLFCFQNTNNNYHSDFKEAKDSLRSALRDQ--CQKVKRCVLQCQKNQIDCPV 162
           M  L   +   +N+ S     KD +R A+  +  C KV+R  LQC+  + DC +
Sbjct: 498 MLDLILIKCAEDNFVSVAHSCKDYMRMAMHHERSCNKVRRLSLQCKAARSDCAI 551


>06_03_0608 +
           22705321-22705652,22705809-22706178,22706264-22706656,
           22707183-22707204,22707257-22707928,22708019-22708494
          Length = 754

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = +3

Query: 360 LVTRTHGVSTLMLQST*YMVTKFLRFFCFSN*ESRVAGNRYKHALTTIS 506
           L+ + +G+   +  ST  M+  FL F C  N  +R A NR+KH+  TIS
Sbjct: 429 LLVQRYGLEPSLHMSTHEMLAMFL-FTCGGNESNRRAQNRFKHSGETIS 476


>05_07_0352 -
           29475855-29476330,29476421-29477165,29477689-29478081,
           29478167-29478473,29478694-29479019
          Length = 748

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = +3

Query: 360 LVTRTHGVSTLMLQST*YMVTKFLRFFCFSN*ESRVAGNRYKHALTTIS 506
           L+ + +G+   +  ST  M+  FL F C  N  +R A NR+KH+  TIS
Sbjct: 423 LLVQRYGLEPSLHMSTHEMLAMFL-FTCGGNESNRRAQNRFKHSGETIS 470


>02_05_0225 +
           26951993-26952165,26953169-26953567,26953644-26953797,
           26954069-26954240,26954494-26954567,26954667-26954763,
           26954888-26955000,26955168-26955283,26955960-26956017,
           26956512-26956664,26957377-26957460,26957579-26957734,
           26958401-26958469,26959212-26959300,26959398-26959560,
           26959740-26959874,26959950-26960055,26960143-26960237,
           26960508-26960753,26961567-26961635,26961772-26961837,
           26961838-26961983,26962348-26962449,26962752-26962899,
           26964183-26964239,26964315-26964445,26964535-26964623,
           26964694-26965007,26965084-26965176,26966504-26966578,
           26966834-26966895,26967254-26967356,26967518-26967676,
           26967790-26967930,26967981-26968084,26968146-26968260,
           26969017-26969169,26969256-26969417
          Length = 1646

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 338 LPINNSNKTTKQRIIRLIRKFKYVYNQFGGKVLPHFV 228
           LP+NN +KT +   I +IR F Y+   +  ++   F+
Sbjct: 568 LPVNNGSKTEEDISILIIRLFLYIKETYSTQLAYQFL 604


>12_02_0760 -
           22888636-22889407,22889503-22889769,22890001-22890302,
           22890402-22890512,22890990-22891568,22892026-22892087,
           22892434-22892754,22893434-22893776
          Length = 918

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 123 RPTMSK-ESDRLPCYLQRKLRRIQHLRIVEAKKMQKNEMRKDF 248
           RP+ S+ E+D L  Y +  L++   L +   K+  K E+RKDF
Sbjct: 395 RPSSSQQEADNLEGYFREVLQKQVKLLLKGEKEEFKEELRKDF 437


>07_03_1564 +
           27749899-27750166,27750431-27750507,27750923-27750950,
           27751117-27751261,27751351-27751429,27751515-27751633,
           27751732-27752073,27754807-27754896,27755730-27755955,
           27756398-27756784,27757176-27757496
          Length = 693

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
 Frame = +1

Query: 16  LFCFQNTNN--NYHSDFKEAKDSLRSAL------RDQCQKVKRCVLQCQKNQID---CPV 162
           L C + ++N   +HS  K A  ++R+ L      R     ++ C+LQC++N +D    P+
Sbjct: 231 LTCSRGSDNALEFHSTCKIANLTIRAELGCCLLHRSGRLTIEECLLQCEQNPLDYLSFPI 290

Query: 163 ICKE-SYDEFN 192
           I     YD F+
Sbjct: 291 ISTAIEYDSFS 301


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,977,902
Number of Sequences: 37544
Number of extensions: 249827
Number of successful extensions: 630
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)