Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312F05f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    26   0.27 
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    23   1.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.5  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   2.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.8  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 150 RLPCYLQRKLRRIQHLRIVEAKKMQKNEMRKDFATK 257
           RL CY Q+ ++ I+ +  +    M K+ +RK  ATK
Sbjct: 214 RLYCYAQKHVKSIRAVTKLPDTSMAKSFVRKVHATK 249


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 46  SCCWYSGNRIKKTF 5
           SC WY G+   KTF
Sbjct: 193 SCHWYDGSEEAKTF 206


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 156 PCYLQRKLRRIQHLRIVEAKKMQKNEMRKDFATKLV 263
           PC +  K+    +L    AK  ++ ++RKD   K+V
Sbjct: 342 PCVMDCKVGVRTYLESELAKAKERPKLRKDMYEKMV 377


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 156 PCYLQRKLRRIQHLRIVEAKKMQKNEMRKDFATKLV 263
           PC +  K+    +L    AK  ++ ++RKD   K+V
Sbjct: 257 PCVMDCKVGVRTYLESELAKAKERPKLRKDMYEKMV 292


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 156 PCYLQRKLRRIQHLRIVEAKKMQKNEMRKDFATKLV 263
           PC +  K+    +L    AK  ++ ++RKD   K+V
Sbjct: 576 PCVMDCKVGVRTYLESELAKAKERPKLRKDMYEKMV 611


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 268 FTTNLVAKSFRISFFCIFL 212
           +T NL+  +  ISF C+ +
Sbjct: 236 YTVNLILPTVLISFLCVLV 254


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = -3

Query: 306 ATDYSFNSKIQIRLQPIWWQSPS 238
           A +  + +K+Q+++ P W   P+
Sbjct: 695 AAEVRYTAKLQVKVPPRWIVEPT 717


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,598
Number of Sequences: 438
Number of extensions: 3009
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)