Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312F04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0904 - 8916550-8917730,8917762-8918534,8919200-8920029           27   6.9  
09_06_0112 + 20928910-20929200,20929757-20929869,20929970-209300...    27   9.1  

>08_01_0904 - 8916550-8917730,8917762-8918534,8919200-8920029
          Length = 927

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
 Frame = -2

Query: 223 RLLYKKSKILEVF----WHAKISCDDLAARIQEITCQLSS 116
           R +Y +  I+E F    W A  +C+D A+ ++EI  QL+S
Sbjct: 200 RRVYDEGDIVEQFHRRAWVASWACEDSASLLKEIVRQLTS 239


>09_06_0112 +
           20928910-20929200,20929757-20929869,20929970-20930036,
           20930117-20930209,20930306-20930449,20930613-20930704,
           20930986-20931091,20931187-20931271,20931373-20931491,
           20931579-20931746,20931850-20932031,20932153-20932262,
           20932351-20932460,20932708-20932815,20933007-20933108,
           20933219-20933364,20933456-20933801,20934115-20934213,
           20934603-20934656,20934700-20934786,20935305-20935418
          Length = 911

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 47  PILIKRYKVDNTELRLMTSDRRQR*QLTSDFLNTSCEVIARDFGVPE 187
           P  IK ++ D  +++L+  D   R  L      T  EV+   FG PE
Sbjct: 726 PAQIKTWESDGGQIKLIAEDTSTRGTLNCPPKRTIQEVVFASFGNPE 772


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,640,993
Number of Sequences: 37544
Number of extensions: 205161
Number of successful extensions: 352
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)