Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312F03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    27   1.3  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    25   6.8  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   9.0  

>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1418

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 161  HIPAHCNVSYYPYTTHFTCHLSH 229
            H+PAHC +S  P    F C   H
Sbjct: 1318 HLPAHCPLSIVPLEICFLCGTPH 1340


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 16  IVYLHNNKQWTHLRWFPEMRRGERK 90
           + YLHN+ +W   R F     G R+
Sbjct: 804 VSYLHNSMEWFLQRCFSRFMNGSRR 828


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = +3

Query: 165 YLHIATYLTTLTQHILPVTCLISNI*DIFNTLLLASDVCMYVCNGIFEHHFDPLQNVGLT 344
           +L I  Y+T L   I P  CLI    ++   LLL     ++    I++ + +P   + + 
Sbjct: 35  FLKIPVYMTHLGFPITPTVCLI----EMLGLLLLLLIPALFTLIWIYK-YIEPHSLISIP 89

Query: 345 RNFVYL 362
             FV+L
Sbjct: 90  GIFVFL 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,572,670
Number of Sequences: 5004
Number of extensions: 26350
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)