Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312F03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0140 + 21090686-21091645,21092142-21092221,21092705-210929...    28   4.0  
04_01_0072 - 784922-785567,785673-786406                               28   4.0  
02_02_0457 + 10503801-10507358                                         28   4.0  
01_03_0010 - 11608537-11608786,11608816-11608940,11609152-116092...    27   9.1  

>09_06_0140 +
           21090686-21091645,21092142-21092221,21092705-21092906,
           21093052-21093327,21093414-21093482,21093638-21093785,
           21094080-21094228,21094897-21095061,21095623-21095732,
           21095868-21095946,21095947-21096240
          Length = 843

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 107 PTCCSALRSPRRISGNHRR 51
           PT C+  R PR   G+HRR
Sbjct: 55  PTSCATARQPRHARGHHRR 73


>04_01_0072 - 784922-785567,785673-786406
          Length = 459

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 245 VLYVTDETSDR*NVLCKGSKIRCNVQVC 162
           ++Y+ DE+SDR   +CK S   C++Q C
Sbjct: 291 LIYILDESSDRMEWVCKDS---CSIQPC 315


>02_02_0457 + 10503801-10507358
          Length = 1185

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +3

Query: 222 CLISNI*DIFNTL--LLASDVCMYVCNGIFEHHFDPL--QNVGLTRNFV 356
           C + N+   FN L  L   D C + C+  F+ HFD +  Q VG    +V
Sbjct: 679 CRLENLPSDFNKLRNLRRFDSCAFRCDPKFQTHFDAINGQEVGAILQYV 727


>01_03_0010 -
           11608537-11608786,11608816-11608940,11609152-11609217,
           11609741-11609872,11610507-11610608,11610743-11610940,
           11611015-11611161,11611321-11611431,11613241-11613780,
           11613847-11614003,11614148-11614297,11614375-11614514,
           11615346-11615468,11615561-11615677,11617184-11617357,
           11617768-11617909,11618076-11618194,11619773-11619955
          Length = 991

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
 Frame = +1

Query: 10  SFIVYLHNNKQWTHL---RWFPEMRRGER-KAEQQVGVLWGAGRCVCQLLFSLFPHTCTL 177
           S I +   +KQ  H     W+    RG++      +G +     C CQ++ S+ P +   
Sbjct: 568 SVIGHYDTSKQNVHHMDNEWWETQERGDQVDYVLDIGEVGPRATCCCQVVRSVGPWSAGT 627

Query: 178 QRILLPLHNTFYLSLVSSVTYRTFL 252
            +I   +HN  Y SL+    +  ++
Sbjct: 628 TQIEGSIHNA-YFSLIEKAEHFVYI 651


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,144,555
Number of Sequences: 37544
Number of extensions: 171439
Number of successful extensions: 429
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)