Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312F03f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089579-1|AAL90317.1|  911|Drosophila melanogaster RE11181p pro...    28   8.8  
AE014297-3664|AAF56360.2|  911|Drosophila melanogaster CG31121-P...    28   8.8  
AE014297-3663|AAF56359.2|  911|Drosophila melanogaster CG31121-P...    28   8.8  

>AY089579-1|AAL90317.1|  911|Drosophila melanogaster RE11181p
           protein.
          Length = 911

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
 Frame = +1

Query: 67  EMRRGERKAEQQV--GVLWGAGRCVCQLLFSLFPHTCTLQRILLPLHNTFYLSLVSSVTY 240
           + +   R AE+ +  G+   +   + Q L  LFP  C     LLP H+   L   S+ + 
Sbjct: 675 DTQEDRRHAERDIRLGLYTRSLYIIVQSLLGLFPSLCIWLAYLLPAHSMAGLYTYSNSSD 734

Query: 241 RTFLIRFY*LQTYVCMFVTESLNII-LTPCKTS 336
               +    +  Y+ +  T +L    L PCK S
Sbjct: 735 TGIYLYMGYMLLYLTLIQTLALFCAHLLPCKVS 767


>AE014297-3664|AAF56360.2|  911|Drosophila melanogaster CG31121-PB,
           isoform B protein.
          Length = 911

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
 Frame = +1

Query: 67  EMRRGERKAEQQV--GVLWGAGRCVCQLLFSLFPHTCTLQRILLPLHNTFYLSLVSSVTY 240
           + +   R AE+ +  G+   +   + Q L  LFP  C     LLP H+   L   S+ + 
Sbjct: 675 DTQEDRRHAERDIRLGLYTRSLYIIVQSLLGLFPSLCIWLAYLLPAHSMAGLYTYSNSSD 734

Query: 241 RTFLIRFY*LQTYVCMFVTESLNII-LTPCKTS 336
               +    +  Y+ +  T +L    L PCK S
Sbjct: 735 TGIYLYMGYMLLYLTLIQTLALFCAHLLPCKVS 767


>AE014297-3663|AAF56359.2|  911|Drosophila melanogaster CG31121-PA,
           isoform A protein.
          Length = 911

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
 Frame = +1

Query: 67  EMRRGERKAEQQV--GVLWGAGRCVCQLLFSLFPHTCTLQRILLPLHNTFYLSLVSSVTY 240
           + +   R AE+ +  G+   +   + Q L  LFP  C     LLP H+   L   S+ + 
Sbjct: 675 DTQEDRRHAERDIRLGLYTRSLYIIVQSLLGLFPSLCIWLAYLLPAHSMAGLYTYSNSSD 734

Query: 241 RTFLIRFY*LQTYVCMFVTESLNII-LTPCKTS 336
               +    +  Y+ +  T +L    L PCK S
Sbjct: 735 TGIYLYMGYMLLYLTLIQTLALFCAHLLPCKVS 767


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,496,905
Number of Sequences: 53049
Number of extensions: 305680
Number of successful extensions: 866
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)