Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312F03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70852-15|AAK29824.1|  543|Caenorhabditis elegans Hypothetical p...    28   3.5  
Z75549-2|CAA99916.1|  313|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>U70852-15|AAK29824.1|  543|Caenorhabditis elegans Hypothetical
           protein F45E4.11 protein.
          Length = 543

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 22/69 (31%), Positives = 30/69 (43%)
 Frame = +1

Query: 55  RWFPEMRRGERKAEQQVGVLWGAGRCVCQLLFSLFPHTCTLQRILLPLHNTFYLSLVSSV 234
           RWFP+    ER A   +G++ G  +     +     + CT + IL      FYLS   SV
Sbjct: 193 RWFPQ---AERPAA--IGLISGGRQIGTLFILPTAGYLCTRKDILDGWPAIFYLSATISV 247

Query: 235 TYRTFLIRF 261
               F I F
Sbjct: 248 LVTVFWIPF 256


>Z75549-2|CAA99916.1|  313|Caenorhabditis elegans Hypothetical
           protein T19C4.2 protein.
          Length = 313

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 145 LFSLFPHTCTLQRILLPLHNTFYLSLVSSVTYRTFLIRF 261
           L S+   TC L  I L L N F L+++ S+ Y    +++
Sbjct: 60  LSSVTCQTCALSSIYLMLENNFTLNIMYSLMYNMSYVQY 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,895,102
Number of Sequences: 27780
Number of extensions: 154627
Number of successful extensions: 429
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)