Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312F02f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.42
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch... 28 0.97
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 27 1.7
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 27 2.2
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 26 3.9
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T... 26 3.9
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 25 5.2
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 25 6.8
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 25 9.0
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc... 25 9.0
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 25 9.0
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.1 bits (62), Expect = 0.42
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +1
Query: 322 SCR--FLGELCHSDTSAEGCH*ICEAILGRRSR*EEEVEATPAHTGTPATE 468
SC+ F +LCH D E C+ G+R E V +P H G P E
Sbjct: 707 SCKTHFCEKLCHPDGECESS---CKKECGKRRMYCEHVCQSPCHAGHPCDE 754
>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 830
Score = 27.9 bits (59), Expect = 0.97
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 113 SALPSLIGRRLRHYSLRPQRILLTPP 36
SAL L R L H ++PQ +LL PP
Sbjct: 143 SALQFLRSRSLIHRDVKPQNLLLQPP 168
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 95 SVMGVLKTCSDDNVALCLKEKALRYVENVSNSRE 196
S MG+LK DD++ + ++ LR+ S ++
Sbjct: 192 SPMGILKNIQDDSMTIVTNKRILRFEPKTSRGKD 225
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 412 ATFFQGSLRRFNGTLRQTYLNDKVLQEIGNSVQKSEVYLI 293
+TF LR F+ T YL+D L+EI V S + L+
Sbjct: 476 STFISLLLRYFSPTYGNIYLDDFPLEEIDEHVLGSTITLV 515
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 421 EEVEATPAHTGTPATEDPVPH 483
E A P H G+P TE P P+
Sbjct: 527 ENPPAMPDHNGSPTTEPPKPN 547
>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 477
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -2
Query: 397 GSLRRFNGTLRQTYLNDKVLQEIGNSVQKSEVYLILPG 284
G+ +RFN +TYL + ++ S+V L + G
Sbjct: 271 GNSKRFNNENEETYLKESGFHDLEEEASDSKVVLKIKG 308
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -2
Query: 163 QSFFLETQCDVVIGA-SFQHSHH*SEDVFVTIRCGHSAYC 47
++ FL+ +V +G F S F+ RCG AYC
Sbjct: 152 ENIFLDKAYNVKLGDFGFSRDSDCSRRTFMNTRCGTVAYC 191
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 25.0 bits (52), Expect = 6.8
Identities = 22/84 (26%), Positives = 37/84 (44%)
Frame = +2
Query: 83 DVFRSVMGVLKTCSDDNVALCLKEKALRYVENVSNSRELNLIDGVSLIGQGSPRSARSFE 262
DVF + VL +D+NV + R E+V++ ++ LI + + R F+
Sbjct: 484 DVFDRIRFVLNGLTDNNVEVSRHNNIGRTAESVTHLTDMLLIT-TKDVAFVTDRVNFEFQ 542
Query: 263 PLPDEPRARENQVDLRLLDGVADF 334
D R N++ RL D D+
Sbjct: 543 RYQDTHRQDLNRILNRLTDSHIDW 566
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -2
Query: 199 EFSRIRDIFHVSQSFFLE 146
E SRI D+ H+ + FF++
Sbjct: 508 ELSRISDLLHIKKHFFVD 525
>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
Nse5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 462 CRSASMGRSCFNFFFLPRPSSKDRFADSMA 373
C R CF+ F LP+ + + FA SM+
Sbjct: 163 CELQDAIRICFSCFTLPQQTMESPFATSMS 192
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 154 FLETQCDVVIGASFQHSHH*SEDVFVTIR 68
+LE Q ++ G HH S+DVF+ IR
Sbjct: 231 YLELQRNICQGNLSCWDHHYSDDVFLLIR 259
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,964,505
Number of Sequences: 5004
Number of extensions: 38422
Number of successful extensions: 123
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -