Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312F02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-56...    27   6.9  
02_01_0432 - 3144560-3144655,3144792-3144832,3145019-3145094,314...    27   6.9  
01_07_0294 + 42571700-42573373,42573653-42573720,42573785-425738...    27   6.9  
10_08_0931 - 21647562-21649037                                         27   9.1  
04_03_0904 + 20717005-20718087                                         27   9.1  
04_01_0175 - 1972361-1972429,1973185-1973334,1974956-1975105,197...    27   9.1  
01_06_0243 + 27833497-27834042,27834144-27834238,27834400-27835567     27   9.1  

>05_01_0084 +
           562119-562411,562854-562902,563151-563162,563194-563327,
           563716-566278
          Length = 1016

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +2

Query: 71  NSDEDVFRSV-MGVLKTCSDDNVALCLKEKALRYVENVSNSRELNLIDGVSLIGQGSPRS 247
           N D ++   + +  ++ CSDD+ ++   +   R +  + N     ++D + ++   SP S
Sbjct: 462 NHDYEITLDIGLSTVEVCSDDDNSIPRLQYNFRQISELENMANETIVDLLGVVTSVSP-S 520

Query: 248 ARSFEPLPDEPRARENQV 301
           A     +  E R R  Q+
Sbjct: 521 ATIMRKIGTETRKRSIQL 538


>02_01_0432 -
           3144560-3144655,3144792-3144832,3145019-3145094,
           3145465-3145542,3146121-3146208,3146613-3146686,
           3147445-3147579,3147699-3147770,3148239-3148325,
           3148418-3148522,3149028-3149085,3149576-3149634,
           3149960-3150056,3150217-3150317,3150443-3150487,
           3150619-3150681,3151082-3151147,3151286-3151342,
           3151570-3151656,3152063-3152239,3152413-3152625
          Length = 624

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +1

Query: 166 IRGKCLEFSRTQLNRWRQSDRSRLP*ISQVLRAFTRRA-QSQGESSRPQTFGRSCRFLGE 342
           IR K + F+  +    R++   +L      L+A TR + Q + ESS    FG  C FLG 
Sbjct: 311 IRCKLVNFTLARFEELREA-LEKLQLNDAALKAVTRFSMQFEPESSSAMGFGFRCGFLG- 368

Query: 343 LCHSDTSAE 369
           L H +   E
Sbjct: 369 LLHMEIVQE 377


>01_07_0294 +
           42571700-42573373,42573653-42573720,42573785-42573819,
           42573988-42574061,42574491-42574726,42574958-42575044,
           42575356-42575455,42575584-42576003
          Length = 897

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +2

Query: 149 KEKALRYVENVSNSRELNLIDGVSLIGQGSPR 244
           KEK+ +    ++ ++++ L+DGV ++   SPR
Sbjct: 483 KEKSSQAKRKLAKTKKMQLLDGVVVVSTSSPR 514


>10_08_0931 - 21647562-21649037
          Length = 491

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 24/74 (32%), Positives = 35/74 (47%)
 Frame = +2

Query: 176 NVSNSRELNLIDGVSLIGQGSPRSARSFEPLPDEPRARENQVDLRLLDGVADFLENFVIQ 355
           NV+ S E +  D   + G G   +  +       P   EN+VD +  + +A F E    Q
Sbjct: 414 NVTVSSESSDDDDSDVDGDGELSTRGNSPRRESSPEVDENEVDKKAEEFIARFRE----Q 469

Query: 356 IRLPKGAIESAKRS 397
           IRL +  IES K+S
Sbjct: 470 IRLQR--IESIKKS 481


>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 439 PAHTGTPATEDPVPHPRLP 495
           PAHT TP T  P P P  P
Sbjct: 103 PAHTPTPPTYTPTPTPPKP 121


>04_01_0175 -
           1972361-1972429,1973185-1973334,1974956-1975105,
           1975370-1975417,1975717-1975793,1975897-1975999,
           1977103-1977233,1978793-1978970,1980656-1980676,
           1981233-1981290,1981381-1981444,1982261-1982431,
           1982526-1982637,1982779-1983021,1983783-1983964,
           1984785-1984920
          Length = 630

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 244 ISQVLRAFTRRAQSQGESSRPQTFGRSCRFLGEL 345
           +S  +RAF R   S+ E + PQ       FLG L
Sbjct: 576 VSGAVRAFLRHLPSRAEETAPQQTSSFLEFLGPL 609


>01_06_0243 + 27833497-27834042,27834144-27834238,27834400-27835567
          Length = 602

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +2

Query: 173 ENVSNSRELNLIDGVSLIGQGSPRSARSFEPLPDEPRARENQVDLRLLDGVADFLEN 343
           ++V    +L L DG  ++  G  R A S+E +P   RA      LRLL    D +EN
Sbjct: 211 KSVRYGTQLVLPDGSFIVIGG--RRAFSYEFVPAAGRANARATPLRLLRDTTDDVEN 265


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,509,593
Number of Sequences: 37544
Number of extensions: 285606
Number of successful extensions: 926
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)