Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312F02f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58305| Best HMM Match : Band_41 (HMM E-Value=4.8e-08)               28   4.1  
SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_16527| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)                    28   5.4  
SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4)                      28   5.4  
SB_2033| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                 27   9.4  

>SB_58305| Best HMM Match : Band_41 (HMM E-Value=4.8e-08)
          Length = 275

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 430 EATPAHTGTPATEDPVPHPRLPRNHCLCR 516
           EA  A T +P  E P    +LPRN  LCR
Sbjct: 7   EAEKAETSSPEKESP--KKKLPRNRLLCR 33


>SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 668

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 5/37 (13%)
 Frame = -1

Query: 125 RSKFSALPSLIGR-RL----RHYSLRPQRILLTPPGA 30
           R++F   PS++ R RL    +  + RP+RI+ +PPGA
Sbjct: 126 RTRFMRTPSVMDRHRLWTLRKEVAFRPRRIIYSPPGA 162


>SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1333

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 430 EATPAHTGTPATEDPVPHPRLPR 498
           E+   HT  P TE P+ HP L R
Sbjct: 178 ESPMVHTSLPYTESPIAHPSLIR 200


>SB_16527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 104 PSLIGRRLRHYSLRPQRILLTPPGASWF 21
           P+  G +LR+ S  PQ + + PP   W+
Sbjct: 4   PNKRGHQLRNLSSNPQGLAIRPPSVLWY 31


>SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)
          Length = 1650

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 440 GVASTSSSYRDLLPRIASQIQWHPSADVSE*QSSPRNRQLRPKV 309
           G+   S   RDL  ++A++++  PS      +SSPR R ++  V
Sbjct: 33  GLRPRSEEKRDLFLQLANEVKTSPSPVRKRRRSSPRKRHVQATV 76


>SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4)
          Length = 311

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 359 RLPKGAIESAKRSLEEGRG 415
           RL KG+IE  KR+ E+G+G
Sbjct: 121 RLNKGSIEQGKRATEQGKG 139


>SB_2033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 995

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 295 SSRPQTFGRSCRFLGELCHSDTSAEGCH*ICEAILGRRSR*EEE 426
           +++ +T    CR L  +CH D     CH  C+A   RR R + E
Sbjct: 814 NAKSKTIYLHCRVL--VCHKDDPQSRCHQGCQASERRRRRGQGE 855


>SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 890

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 87  SSDQ*WEC*KLAPMTTSHCVSRKKLCDTWKM 179
           ++D  WE  + A  T   CV  K + DTW +
Sbjct: 431 NTDDLWESFRQASCTRGSCVDVKYIMDTWTL 461


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,230,576
Number of Sequences: 59808
Number of extensions: 326930
Number of successful extensions: 968
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)