Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312F01f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0428 + 3055163-3055573 61 6e-10
06_01_0427 - 3054204-3054614 61 6e-10
06_01_0425 - 3045557-3046004,3046852-3046856 61 6e-10
06_01_0423 - 3039527-3039937 61 6e-10
06_01_0217 - 1644696-1645034,1645143-1645214 61 6e-10
05_04_0449 - 21355439-21355849 61 6e-10
04_04_0062 + 22437653-22437724,22437866-22437943,22438222-22438392 61 6e-10
04_03_0909 + 20748653-20749063 61 6e-10
03_03_0212 + 15479850-15479921,15479965-15480083,15480175-154802... 61 6e-10
01_06_1456 + 37507156-37507566 61 6e-10
12_02_0048 - 12852335-12852745 58 4e-09
11_01_0348 - 2607315-2607424,2608634-2609030 55 3e-08
02_03_0108 - 15324922-15325092,15325189-15325279,15325511-15325596 54 5e-08
02_03_0107 - 15303890-15304060,15304158-15304248,15304505-153046... 54 5e-08
12_02_0047 - 12836779-12837189 52 3e-07
05_05_0297 - 23921648-23921758,23922011-23922089,23922774-239228... 50 1e-06
01_06_0746 - 31636024-31641396 24 4.2
09_04_0353 + 16915618-16916934 28 5.2
>06_01_0428 + 3055163-3055573
Length = 136
Score = 60.9 bits (141), Expect = 6e-10
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3
Query: 519 NLCAIHAKRVTIMPKDIQLARRIRGERA 436
NLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 109 NLCAIHAKRVTIMPKDIQLARRIRGERA 136
>06_01_0427 - 3054204-3054614
Length = 136
Score = 60.9 bits (141), Expect = 6e-10
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3
Query: 519 NLCAIHAKRVTIMPKDIQLARRIRGERA 436
NLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 109 NLCAIHAKRVTIMPKDIQLARRIRGERA 136
>06_01_0425 - 3045557-3046004,3046852-3046856
Length = 150
Score = 60.9 bits (141), Expect = 6e-10
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3
Query: 519 NLCAIHAKRVTIMPKDIQLARRIRGERA 436
NLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 123 NLCAIHAKRVTIMPKDIQLARRIRGERA 150
>06_01_0423 - 3039527-3039937
Length = 136
Score = 60.9 bits (141), Expect = 6e-10
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3
Query: 519 NLCAIHAKRVTIMPKDIQLARRIRGERA 436
NLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 109 NLCAIHAKRVTIMPKDIQLARRIRGERA 136
>06_01_0217 - 1644696-1645034,1645143-1645214
Length = 136
Score = 60.9 bits (141), Expect = 6e-10
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3
Query: 519 NLCAIHAKRVTIMPKDIQLARRIRGERA 436
NLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 109 NLCAIHAKRVTIMPKDIQLARRIRGERA 136
>05_04_0449 - 21355439-21355849
Length = 136
Score = 60.9 bits (141), Expect = 6e-10
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3
Query: 519 NLCAIHAKRVTIMPKDIQLARRIRGERA 436
NLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 109 NLCAIHAKRVTIMPKDIQLARRIRGERA 136
>04_04_0062 + 22437653-22437724,22437866-22437943,22438222-22438392
Length = 106
Score = 60.9 bits (141), Expect = 6e-10
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3
Query: 519 NLCAIHAKRVTIMPKDIQLARRIRGERA 436
NLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 79 NLCAIHAKRVTIMPKDIQLARRIRGERA 106
>04_03_0909 + 20748653-20749063
Length = 136
Score = 60.9 bits (141), Expect = 6e-10
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3
Query: 519 NLCAIHAKRVTIMPKDIQLARRIRGERA 436
NLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 109 NLCAIHAKRVTIMPKDIQLARRIRGERA 136
>03_03_0212 +
15479850-15479921,15479965-15480083,15480175-15480265,
15480363-15480533
Length = 150
Score = 60.9 bits (141), Expect = 6e-10
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3
Query: 519 NLCAIHAKRVTIMPKDIQLARRIRGERA 436
NLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 123 NLCAIHAKRVTIMPKDIQLARRIRGERA 150
>01_06_1456 + 37507156-37507566
Length = 136
Score = 60.9 bits (141), Expect = 6e-10
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3
Query: 519 NLCAIHAKRVTIMPKDIQLARRIRGERA 436
NLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 109 NLCAIHAKRVTIMPKDIQLARRIRGERA 136
>12_02_0048 - 12852335-12852745
Length = 136
Score = 58.0 bits (134), Expect = 4e-09
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = -3
Query: 519 NLCAIHAKRVTIMPKDIQLARRIRGERA 436
NLC IHAKRVTIMPKDIQLARRIRGE+A
Sbjct: 109 NLCVIHAKRVTIMPKDIQLARRIRGEKA 136
>11_01_0348 - 2607315-2607424,2608634-2609030
Length = 168
Score = 55.2 bits (127), Expect = 3e-08
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = -3
Query: 519 NLCAIHAKRVTIMPKDIQLARRIRG 445
NLCAIHAKRVTIMPKDIQLARRIRG
Sbjct: 109 NLCAIHAKRVTIMPKDIQLARRIRG 133
>02_03_0108 - 15324922-15325092,15325189-15325279,15325511-15325596
Length = 115
Score = 54.4 bits (125), Expect = 5e-08
Identities = 24/27 (88%), Positives = 26/27 (96%)
Frame = -3
Query: 519 NLCAIHAKRVTIMPKDIQLARRIRGER 439
NLCAIH+KRVTIM KD+QLARRIRGER
Sbjct: 88 NLCAIHSKRVTIMSKDVQLARRIRGER 114
>02_03_0107 -
15303890-15304060,15304158-15304248,15304505-15304614,
15304715-15304784,15306365-15306558
Length = 211
Score = 54.4 bits (125), Expect = 5e-08
Identities = 24/27 (88%), Positives = 26/27 (96%)
Frame = -3
Query: 519 NLCAIHAKRVTIMPKDIQLARRIRGER 439
NLCAIH+KRVTIM KD+QLARRIRGER
Sbjct: 184 NLCAIHSKRVTIMSKDVQLARRIRGER 210
>12_02_0047 - 12836779-12837189
Length = 136
Score = 52.0 bits (119), Expect = 3e-07
Identities = 24/28 (85%), Positives = 25/28 (89%)
Frame = -3
Query: 519 NLCAIHAKRVTIMPKDIQLARRIRGERA 436
NLC IHAKRVTIMPKDIQLAR I GE+A
Sbjct: 109 NLCVIHAKRVTIMPKDIQLARCIGGEKA 136
>05_05_0297 -
23921648-23921758,23922011-23922089,23922774-23922822,
23923180-23923255,23923693-23923767,23923862-23923992,
23924830-23924935
Length = 208
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = -3
Query: 519 NLCAIHAKRVTIMPKDIQLARRIRGER 439
NLCAIHAKRVTIM KD+QLARRI G R
Sbjct: 118 NLCAIHAKRVTIMQKDMQLARRIGGRR 144
>01_06_0746 - 31636024-31641396
Length = 1790
Score = 23.8 bits (49), Expect(2) = 4.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 294 YATMKYENDVFHQNSVIGLLAKPR 223
+ +++YENDV+ N GL +PR
Sbjct: 1035 FGSVQYENDVYPMNG--GLSQRPR 1056
Score = 22.6 bits (46), Expect(2) = 4.2
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = -3
Query: 225 RYGHVILCKVH*SQKKPMD 169
+Y +V+ C+++ +QKK D
Sbjct: 1081 KYTYVVACQIYGNQKKAKD 1099
>09_04_0353 + 16915618-16916934
Length = 438
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 442 FTTDSSSKLNILRHDGHTFGVNSTQV 519
F DS+S +L ++ TFG NST+V
Sbjct: 163 FYGDSASSAGVLANETFTFGTNSTRV 188
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,224,189
Number of Sequences: 37544
Number of extensions: 178017
Number of successful extensions: 312
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -