Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312E12f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L07493-1|AAA58350.1|  121|Homo sapiens replication protein A 14k...    37   0.037
DQ003136-1|AAX84517.1|  121|Homo sapiens replication protein A3,...    37   0.037
BT007320-1|AAP35984.1|  121|Homo sapiens replication protein A3,...    37   0.037
BC009868-1|AAH09868.1|  121|Homo sapiens replication protein A3,...    37   0.037
BC005264-1|AAH05264.1|  121|Homo sapiens replication protein A3,...    37   0.037
AC004948-1|AAQ96878.1|  121|Homo sapiens unknown protein.              37   0.037
AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related ...    30   5.7  

>L07493-1|AAA58350.1|  121|Homo sapiens replication protein A 14kDa
           subunit protein.
          Length = 121

 Score = 37.1 bits (82), Expect = 0.037
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = -2

Query: 427 VTAGNLASKNGAKVTLWGKVTRVSAS-EGFYVKTVDDQEVLIRLRKPLDEPLEGWYEIIG 251
           + AG LA      V   G++ ++  + + F +   + +   I L +PLDE + G  E++G
Sbjct: 12  INAGMLAQFIDKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELMEPLDEEISGIVEVVG 71

Query: 250 -VSQGKTVLCEDYVSLPDN 197
            V+   T+LC  YV   ++
Sbjct: 72  RVTAKATILCTSYVQFKED 90


>DQ003136-1|AAX84517.1|  121|Homo sapiens replication protein A3,
           14kDa protein.
          Length = 121

 Score = 37.1 bits (82), Expect = 0.037
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = -2

Query: 427 VTAGNLASKNGAKVTLWGKVTRVSAS-EGFYVKTVDDQEVLIRLRKPLDEPLEGWYEIIG 251
           + AG LA      V   G++ ++  + + F +   + +   I L +PLDE + G  E++G
Sbjct: 12  INAGMLAQFIDKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELMEPLDEEISGIVEVVG 71

Query: 250 -VSQGKTVLCEDYVSLPDN 197
            V+   T+LC  YV   ++
Sbjct: 72  RVTAKATILCTSYVQFKED 90


>BT007320-1|AAP35984.1|  121|Homo sapiens replication protein A3,
           14kDa protein.
          Length = 121

 Score = 37.1 bits (82), Expect = 0.037
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = -2

Query: 427 VTAGNLASKNGAKVTLWGKVTRVSAS-EGFYVKTVDDQEVLIRLRKPLDEPLEGWYEIIG 251
           + AG LA      V   G++ ++  + + F +   + +   I L +PLDE + G  E++G
Sbjct: 12  INAGMLAQFIDKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELMEPLDEEISGIVEVVG 71

Query: 250 -VSQGKTVLCEDYVSLPDN 197
            V+   T+LC  YV   ++
Sbjct: 72  RVTAKATILCTSYVQFKED 90


>BC009868-1|AAH09868.1|  121|Homo sapiens replication protein A3,
           14kDa protein.
          Length = 121

 Score = 37.1 bits (82), Expect = 0.037
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = -2

Query: 427 VTAGNLASKNGAKVTLWGKVTRVSAS-EGFYVKTVDDQEVLIRLRKPLDEPLEGWYEIIG 251
           + AG LA      V   G++ ++  + + F +   + +   I L +PLDE + G  E++G
Sbjct: 12  INAGMLAQFIDKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELMEPLDEEISGIVEVVG 71

Query: 250 -VSQGKTVLCEDYVSLPDN 197
            V+   T+LC  YV   ++
Sbjct: 72  RVTAKATILCTSYVQFKED 90


>BC005264-1|AAH05264.1|  121|Homo sapiens replication protein A3,
           14kDa protein.
          Length = 121

 Score = 37.1 bits (82), Expect = 0.037
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = -2

Query: 427 VTAGNLASKNGAKVTLWGKVTRVSAS-EGFYVKTVDDQEVLIRLRKPLDEPLEGWYEIIG 251
           + AG LA      V   G++ ++  + + F +   + +   I L +PLDE + G  E++G
Sbjct: 12  INAGMLAQFIDKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELMEPLDEEISGIVEVVG 71

Query: 250 -VSQGKTVLCEDYVSLPDN 197
            V+   T+LC  YV   ++
Sbjct: 72  RVTAKATILCTSYVQFKED 90


>AC004948-1|AAQ96878.1|  121|Homo sapiens unknown protein.
          Length = 121

 Score = 37.1 bits (82), Expect = 0.037
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = -2

Query: 427 VTAGNLASKNGAKVTLWGKVTRVSAS-EGFYVKTVDDQEVLIRLRKPLDEPLEGWYEIIG 251
           + AG LA      V   G++ ++  + + F +   + +   I L +PLDE + G  E++G
Sbjct: 12  INAGMLAQFIDKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELMEPLDEEISGIVEVVG 71

Query: 250 -VSQGKTVLCEDYVSLPDN 197
            V+   T+LC  YV   ++
Sbjct: 72  RVTAKATILCTSYVQFKED 90


>AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related tumor
             marker CA125 protein.
          Length = 22152

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
 Frame = +3

Query: 114   SPRFQGSSKAANNLAKALCPSISMFAVMLSGRET*SS-----HSTVLPCDTPIISYHPSS 278
             SPR + SS     ++    P +    +  SG  T ++     HS  +P  T ++S HP +
Sbjct: 11724 SPRTEASSAVLTTISPG-APEMVTSQITSSGAATSTTVPTLTHSPGMPETTALLSTHPRT 11782

Query: 279   GSSKGF 296
             G+SK F
Sbjct: 11783 GTSKTF 11788


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,027,102
Number of Sequences: 237096
Number of extensions: 1239408
Number of successful extensions: 1893
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1893
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)