Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312E12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    29   2.7  
Z69904-10|CAA93782.2|  754|Caenorhabditis elegans Hypothetical p...    27   6.2  
Z69902-13|CAA93770.2|  754|Caenorhabditis elegans Hypothetical p...    27   6.2  
AL132860-4|CAB60496.1|  762|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -2

Query: 373  KVTRVSASEGFYVKTVDDQEVLIRLRKPLDEPLEGWYEII 254
            K+    A++  YVK V   ++   +RK LD  L G+YEII
Sbjct: 3998 KIEVNDANKDEYVKLVCQMKMTGSIRKQLDAFLTGFYEII 4037


>Z69904-10|CAA93782.2|  754|Caenorhabditis elegans Hypothetical
           protein ZK20.6 protein.
          Length = 754

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 366 VTFPQSVTLAPFFEARLP-AVTYG 434
           + FP  +   PFF+AR P A+ YG
Sbjct: 556 IAFPAGILQQPFFDARFPKALNYG 579


>Z69902-13|CAA93770.2|  754|Caenorhabditis elegans Hypothetical
           protein ZK20.6 protein.
          Length = 754

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 366 VTFPQSVTLAPFFEARLP-AVTYG 434
           + FP  +   PFF+AR P A+ YG
Sbjct: 556 IAFPAGILQQPFFDARFPKALNYG 579


>AL132860-4|CAB60496.1|  762|Caenorhabditis elegans Hypothetical
           protein Y56A3A.5 protein.
          Length = 762

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 364 RVSASEGFYVKTVDDQEVLIRL 299
           R+  S GF+ + V+DQE L+RL
Sbjct: 418 RLGYSCGFFTRNVEDQEYLLRL 439


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,755,261
Number of Sequences: 27780
Number of extensions: 199739
Number of successful extensions: 472
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)