Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312E11f
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    24   6.8  
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    24   6.8  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    24   6.8  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    24   9.0  
SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom...    24   9.0  

>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -3

Query: 167 EDG-KPRAPRTSPSQGNSSHKYPTSTRLR 84
           EDG KPR P T  +   SSHK  T +  R
Sbjct: 447 EDGVKPRKPPTRGTATISSHKGKTRSETR 475


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 119 SSHKYPTSTRLRKPHTLLVLAPDRVPLNKVSVYL 18
           +SH     + LR+P T++   P+R+   + +V L
Sbjct: 440 NSHSETDDSILRRPRTVVTFIPERLLCKRFNVAL 473


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 164 DGKPRAPRTSPSQGNSSHKYPTSTRLRKPHTLLVLAPDRVP 42
           + +P A +     GN SHK  T  R ++     V A + VP
Sbjct: 225 ENEPSAKQNKSFSGNDSHKSLTDIRDKENGETEVSAKNHVP 265


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -3

Query: 170 HEDGKPR-APRTSPSQGNSSHKYPTSTRLRKPHTLLVLAPDRV 45
           HE   PR A  TSP+  +    +P     R   T    +PD++
Sbjct: 184 HEIEPPRTASNTSPTPNSIKSAHPAEPPKRPAFTRSATSPDKI 226


>SPBC776.07 |||mitochondrial Mam33 family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 165 GREAPCSKDISKPG 124
           GR  PC+ +ISKPG
Sbjct: 155 GRFQPCTIEISKPG 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,283,973
Number of Sequences: 5004
Number of extensions: 20222
Number of successful extensions: 44
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)