Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312E11f
         (376 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U20979-1|AAA76736.1|  938|Homo sapiens chromatin assembly factor...    29   3.7  
BC067093-1|AAH67093.1|  956|Homo sapiens chromatin assembly fact...    29   3.7  
BC052620-1|AAH52620.1|  411|Homo sapiens CHAF1A protein protein.       29   3.7  
AF190465-2|AAF04291.1|  938|Homo sapiens chromatin assembly fact...    29   3.7  

>U20979-1|AAA76736.1|  938|Homo sapiens chromatin assembly factor-I
           p150 subunit protein.
          Length = 938

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
 Frame = -3

Query: 251 PLGKDMXR----IDVRPPRXSCAXSAHLXXXHEDGKPRAPRTSPSQGNSSHKYPTSTRLR 84
           P GK+M      ++  P   S    + L        P  P   P Q +S+  +PTST LR
Sbjct: 242 PQGKNMTPESEVLESFPEEDSVLSHSSLSSPSSTSSPEGPPAPPKQHSSTSPFPTSTPLR 301

Query: 83  K 81
           +
Sbjct: 302 R 302


>BC067093-1|AAH67093.1|  956|Homo sapiens chromatin assembly factor
           1, subunit A (p150) protein.
          Length = 956

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
 Frame = -3

Query: 251 PLGKDMXR----IDVRPPRXSCAXSAHLXXXHEDGKPRAPRTSPSQGNSSHKYPTSTRLR 84
           P GK+M      ++  P   S    + L        P  P   P Q +S+  +PTST LR
Sbjct: 260 PQGKNMTPESEVLESFPEEDSVLSHSSLSSPSSTSSPEGPPAPPKQHSSTSPFPTSTPLR 319

Query: 83  K 81
           +
Sbjct: 320 R 320


>BC052620-1|AAH52620.1|  411|Homo sapiens CHAF1A protein protein.
          Length = 411

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
 Frame = -3

Query: 251 PLGKDMXR----IDVRPPRXSCAXSAHLXXXHEDGKPRAPRTSPSQGNSSHKYPTSTRLR 84
           P GK+M      ++  P   S    + L        P  P   P Q +S+  +PTST LR
Sbjct: 242 PQGKNMTPESEVLESFPEEDSVLSHSSLSSPSSTSSPEGPPAPPKQHSSTSPFPTSTPLR 301

Query: 83  K 81
           +
Sbjct: 302 R 302


>AF190465-2|AAF04291.1|  938|Homo sapiens chromatin assembly
           factor-I p150 subunit protein.
          Length = 938

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
 Frame = -3

Query: 251 PLGKDMXR----IDVRPPRXSCAXSAHLXXXHEDGKPRAPRTSPSQGNSSHKYPTSTRLR 84
           P GK+M      ++  P   S    + L        P  P   P Q +S+  +PTST LR
Sbjct: 242 PQGKNMTPESEVLESFPEEDSVLSHSSLSSPSSTSSPEGPPAPPKQHSSTSPFPTSTPLR 301

Query: 83  K 81
           +
Sbjct: 302 R 302


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,693,304
Number of Sequences: 237096
Number of extensions: 908365
Number of successful extensions: 1755
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1755
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2479134298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)