Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312E11f
         (376 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ831954-1|ABJ09069.1| 1223|Drosophila melanogaster SnoN protein.      27   7.9  
DQ831953-1|ABJ09068.1| 1223|Drosophila melanogaster SnoN protein.      27   7.9  
DQ831952-1|ABJ09067.1| 1223|Drosophila melanogaster SnoN protein.      27   7.9  
DQ138812-1|ABA86418.1|  866|Drosophila melanogaster CG7093 protein.    27   7.9  
AM282581-1|CAK54357.1| 1011|Drosophila melanogaster dSki protein...    27   7.9  
AE014134-1364|AAF52579.2|  887|Drosophila melanogaster CG7093-PA...    27   7.9  

>DQ831954-1|ABJ09069.1| 1223|Drosophila melanogaster SnoN protein.
          Length = 1223

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = -3

Query: 263 TXRPPLGKDMXRIDVRPPRXSCAXSAHLXXXHEDGKPRAPRTSPSQGNSSHKYPTSTR-L 87
           T  PP G  +    V PP  S + S      H    P AP T+P     +   PT+ R +
Sbjct: 568 TASPPDGVVLPLDVVEPPHPSSSGSNSPLPAH---LPAAPATAPPNAGGAPPTPTNLRNM 624

Query: 86  RKP 78
           R P
Sbjct: 625 RSP 627


>DQ831953-1|ABJ09068.1| 1223|Drosophila melanogaster SnoN protein.
          Length = 1223

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = -3

Query: 263 TXRPPLGKDMXRIDVRPPRXSCAXSAHLXXXHEDGKPRAPRTSPSQGNSSHKYPTSTR-L 87
           T  PP G  +    V PP  S + S      H    P AP T+P     +   PT+ R +
Sbjct: 568 TASPPDGVVLPLDVVEPPHPSSSGSNSPLPAH---LPAAPATAPPNAGGAPPTPTNLRNM 624

Query: 86  RKP 78
           R P
Sbjct: 625 RSP 627


>DQ831952-1|ABJ09067.1| 1223|Drosophila melanogaster SnoN protein.
          Length = 1223

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = -3

Query: 263 TXRPPLGKDMXRIDVRPPRXSCAXSAHLXXXHEDGKPRAPRTSPSQGNSSHKYPTSTR-L 87
           T  PP G  +    V PP  S + S      H    P AP T+P     +   PT+ R +
Sbjct: 568 TASPPDGVVLPLDVVEPPHPSSSGSNSPLPAH---LPAAPATAPPNAGGAPPTPTNLRNM 624

Query: 86  RKP 78
           R P
Sbjct: 625 RSP 627


>DQ138812-1|ABA86418.1|  866|Drosophila melanogaster CG7093 protein.
          Length = 866

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = -3

Query: 263 TXRPPLGKDMXRIDVRPPRXSCAXSAHLXXXHEDGKPRAPRTSPSQGNSSHKYPTSTR-L 87
           T  PP G  +    V PP  S + S      H    P AP T+P     +   PT+ R +
Sbjct: 218 TASPPDGVVLPLDVVEPPHPSSSGSNSPLPAH---LPAAPATAPPNAGGAPPTPTNLRNM 274

Query: 86  RKP 78
           R P
Sbjct: 275 RSP 277


>AM282581-1|CAK54357.1| 1011|Drosophila melanogaster dSki protein
           long isoform protein.
          Length = 1011

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = -3

Query: 263 TXRPPLGKDMXRIDVRPPRXSCAXSAHLXXXHEDGKPRAPRTSPSQGNSSHKYPTSTR-L 87
           T  PP G  +    V PP  S + S      H    P AP T+P     +   PT+ R +
Sbjct: 561 TASPPDGVVLPLDVVEPPHPSSSGSNSPLPAH---LPAAPATAPPNAGGAPPTPTNLRNM 617

Query: 86  RKP 78
           R P
Sbjct: 618 RSP 620


>AE014134-1364|AAF52579.2|  887|Drosophila melanogaster CG7093-PA
           protein.
          Length = 887

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = -3

Query: 263 TXRPPLGKDMXRIDVRPPRXSCAXSAHLXXXHEDGKPRAPRTSPSQGNSSHKYPTSTR-L 87
           T  PP G  +    V PP  S + S      H    P AP T+P     +   PT+ R +
Sbjct: 232 TASPPDGVVLPLDVVEPPHPSSSGSNSPLPAH---LPAAPATAPPNAGGAPPTPTNLRNM 288

Query: 86  RKP 78
           R P
Sbjct: 289 RSP 291


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,091,793
Number of Sequences: 53049
Number of extensions: 269393
Number of successful extensions: 618
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 982468965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)