Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312E07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    30   0.18 
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    27   1.3  
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc...    27   2.2  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    26   3.0  
SPBC4B4.06 |vps25||ESCRT II complex subunit Vps25|Schizosaccharo...    26   3.0  
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces...    26   3.0  
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    26   3.9  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   5.2  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   5.2  
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce...    25   5.2  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    25   5.2  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   6.8  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    25   6.8  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    25   9.0  
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    25   9.0  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   9.0  

>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 4/121 (3%)
 Frame = +3

Query: 39  DDFLFILPGDILNPFDWFVLPLTFTTDLRRTMTSCLLWFSFVKLRVSLTAVGWLGVHTIV 218
           +D L +   D      W  L      +   T   CLL   F K+ +  T+ GWL      
Sbjct: 228 EDSLLVNQADAFYKMAWDALESYGLENSHITSAQCLLCLGFYKIAMGNTSHGWLLCGMAF 287

Query: 219 NILHDSGSTSN----HSPGICTISPGGRALPRVICCGCFVGLMTSKFLSQVVPMITLSNT 386
            +  D G   +    H   +  +S    AL   I  GC+V  +   F+      ++ S+T
Sbjct: 288 RMGQDLGFHLDPRDWHINNVPVVSEEQAALRSRIYWGCYVADVFVSFILGRPTTLSKSDT 347

Query: 387 T 389
           +
Sbjct: 348 S 348


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 344 VSLTSCTNDNIVEHNLWRSGERS 412
           VS +S TN    E+N WRS E+S
Sbjct: 377 VSSSSVTNSGHTENNTWRSDEQS 399


>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
           reductase AKR3C2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 284

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 93  VLPLTFTTDLRRTMTSCLLWFSFVKLRVSLTAVGWLGV 206
           V+P+T T+ + R M  CL + SF   +  +  +G LGV
Sbjct: 235 VIPITTTSKIER-MKECLNFDSFTLDKADIDELGTLGV 271


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
 Frame = -2

Query: 520 NMYFEIETT----PEHVKRARRTACKSEESPKEECPRLVLAPFSRPPQVVFDNVIIGTTC 353
           N  FE E T    P  +++A      S E    + P + L  ++ PP+ + DN I+    
Sbjct: 473 NPPFEPENTFSMIPHRLQQAISYYANSPEGDLPQ-PNIYLTRYTNPPKSLLDNCILDLKL 531

Query: 352 ERNLEVINPTKQPQHITLGKALPPG 278
            +    +N   +P++ +   A   G
Sbjct: 532 IKEKLTVNVPVKPKYSSQETAFDTG 556


>SPBC4B4.06 |vps25||ESCRT II complex subunit
           Vps25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 239 FHFQPFSGYMHNQSWW*SFT*SYMLWLFCWIND-FQVSLTSCTNDNIVEHNL 391
           ++F PF     N + W S   ++ +W+  W  +  Q S+T   N  ++E +L
Sbjct: 7   YNFPPFFTRQLNDNTWHSQKAAWQMWILLWCRENRQTSIT--INPELLESSL 56


>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 350

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
 Frame = -2

Query: 268 HIPGEWLEVEP----ESCNILTMVWTPNQPTAVRETLNFTNENHRRHDVIVLLKSVVNVK 101
           H+P    E E     E  N+L +V+ PN    +    NF  E H +   ++++ ++    
Sbjct: 96  HVPSSQDEEEKCDTDELLNLLDVVYAPNLVNILAFLRNFDQEKHLKEIGLLIIDNLSMPI 155

Query: 100 GKTNQSKGFKISPGKMKRKSSKKSPVAIYKKKK 2
                +     +  +++R +SKKS ++   +K+
Sbjct: 156 QLAYPTSPEDYAYLRLRRNTSKKSSLSDSSQKE 188


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -2

Query: 382 FDNVIIGTTCERNLEVINPTKQPQHITLGKALPPGLIVHIPGE 254
           F+ VI+ T   R LE + P        +GK L PG  + IPGE
Sbjct: 287 FNRVILTTLDGRGLEYVQP--------IGKILHPGDCLIIPGE 321


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = -2

Query: 181 RETLNFTNENHRR----HDVIVLLKSVVNVKGKTNQSKGFKISPGKMKRK 44
           +ET+    +NH      +D +  L   ++  GKT +SK   + P ++KRK
Sbjct: 5   KETVFTKPQNHSSTLEFYDFVTTLLEPLSRIGKTRKSKTSNLDPYELKRK 54


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 213 WYGPPTSLLLLEKPLISQMRTIEDM 139
           WY  P+S +LL KPL  Q+ + E+M
Sbjct: 776 WYQSPSSDVLLSKPL--QLNSSEEM 798


>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 376 NVIIGTTCERNLEVINPTKQPQHITLGKALPPGLIV 269
           NV+  T  +RN+ + +  ++P      KALP  +IV
Sbjct: 306 NVVAITGLDRNVRIFDADRKPLANAYIKALPTSIIV 341


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 496 TPEHVKRARRTACKSEESPKEECP 425
           T   + + +R   KSEESP E CP
Sbjct: 635 TASALGKPKRALAKSEESPFEICP 658


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/56 (21%), Positives = 25/56 (44%)
 Frame = +3

Query: 36  FDDFLFILPGDILNPFDWFVLPLTFTTDLRRTMTSCLLWFSFVKLRVSLTAVGWLG 203
           +D + F++   + +    F+L L + TDL        LW+  +    S+    ++G
Sbjct: 632 YDCYDFMIGASLCSHQPKFLLSLVYLTDLVLFFLDTYLWYMLISTMFSIAYSFYMG 687


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 399 DLHKLCSTMLSLVQL 355
           DLH+LCS + S VQL
Sbjct: 226 DLHRLCSIIKSFVQL 240


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -2

Query: 481 KRARRTACKSEESPKEECPRLVLAPFSRPPQVVFDNVIIGTTCERNLEVINPTKQPQHI 305
           +R R T  +     +E  P   L+P  + P+ VFD V+I  T + +  +      P HI
Sbjct: 240 RRGRPTGWRKYPEKEEIYP--TLSPRIKKPRKVFDAVVIPVTIKPS--IYTEPSLPHHI 294


>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -2

Query: 190 TAVRETLNFTNENHRRHDVIVLLKSVVNVKGKTNQSKGFKISPGKMKRK 44
           T  R  L  T  NH  H++    K +++   +TNQ+   K S   + R+
Sbjct: 298 TGRRRELKITKHNHPAHEI---RKQLLSCTNQTNQNNVVKNSASVLVRQ 343


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 319 QPQHITLGKALPPGLIVHIPG 257
           QP  +  G ALPPG+    PG
Sbjct: 521 QPPMVPPGMALPPGMPAPFPG 541


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,438,098
Number of Sequences: 5004
Number of extensions: 53595
Number of successful extensions: 202
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)