Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312E07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0885 + 6966700-6966979,6967930-6968110,6968224-6968365,696...    30   1.3  
01_04_0066 - 15654796-15655098,15655268-15655392,15657249-156576...    29   1.7  
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51...    28   4.0  
12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768           27   9.1  
10_06_0128 - 11039565-11040119,11040727-11040997,11041123-110412...    27   9.1  

>01_01_0885 +
           6966700-6966979,6967930-6968110,6968224-6968365,
           6968448-6968517,6968617-6968783
          Length = 279

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = -2

Query: 400 RPPQVVF-DNVIIGTTCERNLEVINPTKQPQHITLGKALPPGLIVHIPGEWL-EVEPESC 227
           R P+V+  +++++        E+       + I LG+ +   LIV I G WL  V    C
Sbjct: 158 RIPEVIIPEDLVVNIALSTRYEINRAFANLRQIALGRDIKKFLIV-IAGLWLLSVLGSCC 216

Query: 226 NILTMVW 206
           N LT+V+
Sbjct: 217 NFLTLVY 223


>01_04_0066 -
           15654796-15655098,15655268-15655392,15657249-15657603,
           15658236-15658405,15659404-15659608
          Length = 385

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 22/67 (32%), Positives = 31/67 (46%)
 Frame = +3

Query: 273 ISPGGRALPRVICCGCFVGLMTSKFLSQVVPMITLSNTTCGGLENGANTKRGHSSLGDSS 452
           +SPG R+LPR       V L     L Q +P          GL N  +++RG S+L  + 
Sbjct: 9   LSPGARSLPRPALALSRVSLCLPSLL-QRLPSEGGGGGGGSGLPNARSSERGGSALPFAR 67

Query: 453 DLQAVRR 473
              A+RR
Sbjct: 68  SAAALRR 74


>01_01_0066 -
           513578-513730,513809-513920,514000-514163,514369-514521,
           514598-514736,514823-514923,514995-515666,515953-516038,
           516112-516777,516874-517128,517231-517358,518645-518799,
           518880-519133,519186-519260,519324-519399,519511-519644,
           519871-520153,520692-520850,520940-521038,521142-521310,
           521423-521653,522002-522114,524179-524310,524389-524469,
           525641-525763
          Length = 1570

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -2

Query: 379 DNVIIGTTCER-NLEVINPTKQPQHITLGKA 290
           D+ ++G+  +R N+   +PT QPQH+ LG A
Sbjct: 132 DDALMGSQLKRPNVGRSDPTAQPQHMPLGPA 162


>12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768
          Length = 1004

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 471 DVLPVNQKNHPKKNVPVWC*LRSPDLHK 388
           DVLP +QK HP  N+     + SP+ HK
Sbjct: 419 DVLPEDQKEHPAANLNAQ--IESPEDHK 444


>10_06_0128 -
           11039565-11040119,11040727-11040997,11041123-11041217,
           11043553-11043642
          Length = 336

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -3

Query: 399 DLHKLCSTMLSLVQLVRETWKSLIQQNN 316
           ++ K+CS+ + L+++V +TW+    QNN
Sbjct: 121 NIRKICSSKVLLLRIVHQTWRE--AQNN 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,625,783
Number of Sequences: 37544
Number of extensions: 341411
Number of successful extensions: 855
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)