Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312E06f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0972 + 26450208-26450260,26450348-26450498,26451034-264514...    29   2.3  
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718     29   2.3  
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437...    27   6.9  

>06_03_0972 +
           26450208-26450260,26450348-26450498,26451034-26451423,
           26452232-26452432
          Length = 264

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 375 SGCCGNSKNVDHACRSA*MS 434
           S CCG SK V+  C SA MS
Sbjct: 6   SSCCGGSKKVEQGCVSASMS 25


>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
          Length = 1412

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -3

Query: 444 LEPSTS-KLSGMRDQHFSSYHNNLTLSNIRASINNTTRLRIRNKNKTLQWPRLQTRKHL 271
           +EP+     S M   +FS Y N +  +   A+I   T  +   K K +  P ++T  H+
Sbjct: 627 VEPTHGYSFSAMVINYFSDYRNYVVSTTTEANIVEKTTAKKGRKRKVMPSPEVETTDHM 685


>01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,
            4378900-4378970,4379038-4379144,4379241-4379711,
            4379791-4379976,4380132-4380425,4380820-4381434,
            4382219-4382615,4382768-4382850,4383397-4383567,
            4384046-4384243,4384754-4385314,4385401-4385460,
            4385553-4385869,4385980-4386403,4386539-4387006,
            4387093-4387209,4387306-4387427,4387506-4388247,
            4388453-4388485,4388625-4388879,4388975-4389160,
            4390115-4390453,4391293-4392045
          Length = 3017

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 420  SGMRDQHFSSYHNNLTLSNIRASINNTTRLRIRNKNKTL 304
            +G+RD    S+H +L L        + TR R R+K  TL
Sbjct: 2323 NGIRDNTTPSFHQHLQLFESNGEGVHNTRARRRSKTNTL 2361


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,966,221
Number of Sequences: 37544
Number of extensions: 178516
Number of successful extensions: 401
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)