BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS312E06f (521 letters) Database: fruitfly 53,049 sequences; 24,988,368 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value M13373-1|AAA28375.1| 427|Drosophila melanogaster protein ( D.me... 31 1.3 AE014297-519|AAF54083.2| 586|Drosophila melanogaster CG2189-PA ... 31 1.3 AE001572-6|AAD19796.1| 586|Drosophila melanogaster homeodomain ... 31 1.3 X05136-1|CAA28782.1| 590|Drosophila melanogaster protein ( Dros... 30 1.7 BT016153-1|AAV37038.1| 1767|Drosophila melanogaster AT16405p pro... 29 5.1 AE014134-1060|AAF52350.2| 1767|Drosophila melanogaster CG13991-P... 29 5.1 >M13373-1|AAA28375.1| 427|Drosophila melanogaster protein ( D.melanogaster (ANT-C locus) deformed (Dfd) mRNA with a homeo box. ). Length = 427 Score = 30.7 bits (66), Expect = 1.3 Identities = 21/73 (28%), Positives = 34/73 (46%) Frame = -3 Query: 456 YIPNLEPSTSKLSGMRDQHFSSYHNNLTLSNIRASINNTTRLRIRNKNKTLQWPRLQTRK 277 YIP +TS G + QH S+ +NN + +N + NN + L N N + T Sbjct: 345 YIPAAPETTSSYPGSQ-QHLSNNNNNGSGNNNNNNNNNNSNLNNNNNNNQMG----HTNL 399 Query: 276 HLHFLEKSLIMLT 238 H H ++ ++T Sbjct: 400 HGHLQQQQSDLMT 412 >AE014297-519|AAF54083.2| 586|Drosophila melanogaster CG2189-PA protein. Length = 586 Score = 30.7 bits (66), Expect = 1.3 Identities = 21/73 (28%), Positives = 34/73 (46%) Frame = -3 Query: 456 YIPNLEPSTSKLSGMRDQHFSSYHNNLTLSNIRASINNTTRLRIRNKNKTLQWPRLQTRK 277 YIP +TS G + QH S+ +NN + +N + NN + L N N + T Sbjct: 504 YIPAAPETTSSYPGSQ-QHLSNNNNNGSGNNNNNNNNNNSNLNNNNNNNQMG----HTNL 558 Query: 276 HLHFLEKSLIMLT 238 H H ++ ++T Sbjct: 559 HGHLQQQQSDLMT 571 >AE001572-6|AAD19796.1| 586|Drosophila melanogaster homeodomain protein protein. Length = 586 Score = 30.7 bits (66), Expect = 1.3 Identities = 21/73 (28%), Positives = 34/73 (46%) Frame = -3 Query: 456 YIPNLEPSTSKLSGMRDQHFSSYHNNLTLSNIRASINNTTRLRIRNKNKTLQWPRLQTRK 277 YIP +TS G + QH S+ +NN + +N + NN + L N N + T Sbjct: 504 YIPAAPETTSSYPGSQ-QHLSNNNNNGSGNNNNNNNNNNSNLNNNNNNNQMG----HTNL 558 Query: 276 HLHFLEKSLIMLT 238 H H ++ ++T Sbjct: 559 HGHLQQQQSDLMT 571 >X05136-1|CAA28782.1| 590|Drosophila melanogaster protein ( Drosophila mRNA forDeformed (Dfd) protein. ). Length = 590 Score = 30.3 bits (65), Expect = 1.7 Identities = 23/82 (28%), Positives = 35/82 (42%) Frame = -3 Query: 456 YIPNLEPSTSKLSGMRDQHFSSYHNNLTLSNIRASINNTTRLRIRNKNKTLQWPRLQTRK 277 YIP +TS G + QH S+ +NN + N + NN + N N Q Sbjct: 507 YIPAAPETTSSYPGSQ-QHLSNNNNNGS-GNNNNNNNNNNNSNLNNNNNNNQMGHTNLHG 564 Query: 276 HLHFLEKSLIMLTTSVYYKP*Y 211 HL ++S +M ++ K Y Sbjct: 565 HLQ-QQQSDLMTNLQLHIKQDY 585 >BT016153-1|AAV37038.1| 1767|Drosophila melanogaster AT16405p protein. Length = 1767 Score = 28.7 bits (61), Expect = 5.1 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Frame = -3 Query: 396 SSYHNNLTLSNIRA-SINNTTRLRIRNKNK 310 S H+NL N R ++N T +R RNKN+ Sbjct: 2 SMQHHNLAAKNYRMETVNRTLNIRARNKNE 31 >AE014134-1060|AAF52350.2| 1767|Drosophila melanogaster CG13991-PA protein. Length = 1767 Score = 28.7 bits (61), Expect = 5.1 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Frame = -3 Query: 396 SSYHNNLTLSNIRA-SINNTTRLRIRNKNK 310 S H+NL N R ++N T +R RNKN+ Sbjct: 2 SMQHHNLAAKNYRMETVNRTLNMRARNKNE 31 Database: fruitfly Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 24,988,368 Number of sequences in database: 53,049 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,725,512 Number of Sequences: 53049 Number of extensions: 347137 Number of successful extensions: 735 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 724 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 734 length of database: 24,988,368 effective HSP length: 80 effective length of database: 20,744,448 effective search space used: 1929233664 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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