Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312E06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40946-2|AAO91682.1|  780|Caenorhabditis elegans Hypothetical pr...    32   0.29 
U39999-10|AAA81108.2|  306|Caenorhabditis elegans Serpentine rec...    27   6.2  
Z81084-7|CAB03111.1|  312|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z81037-10|CAB02754.1|  312|Caenorhabditis elegans Hypothetical p...    27   8.1  
X95609-1|CAA64867.1|  312|Caenorhabditis elegans mec-8 protein.        27   8.1  
X95608-1|CAA64866.1|  312|Caenorhabditis elegans mec-8 protein.        27   8.1  

>U40946-2|AAO91682.1|  780|Caenorhabditis elegans Hypothetical
           protein W05H9.4 protein.
          Length = 780

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 85  KYFCTDDFLCSSDILNLFHNILSLTKGPRYIYFAMV 192
           KY CT   +   DI  L H+I++ TKG  Y Y+  +
Sbjct: 234 KYLCTSR-IAQMDITTLRHDIIAATKGKEYKYYTHI 268


>U39999-10|AAA81108.2|  306|Caenorhabditis elegans Serpentine
           receptor, class x protein95 protein.
          Length = 306

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 381 CCGNSKNVDHACRSA*MSKVRDWECSIE 464
           CCG +K+V  +CR+A   K R+ +  I+
Sbjct: 203 CCGGAKSVSFSCRNAPRRKQRNAKMFIQ 230


>Z81084-7|CAB03111.1|  312|Caenorhabditis elegans Hypothetical
           protein F46A9.6 protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 441 EPSTSKLSGMRDQHFSSYHNNLTLSNIRASINNTTRLRIRNKN 313
           + STS  S +   + S+  N  TL  +  + +  TRLR+ NKN
Sbjct: 221 QASTSACSTLFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKN 263


>Z81037-10|CAB02754.1|  312|Caenorhabditis elegans Hypothetical
           protein F46A9.6 protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 441 EPSTSKLSGMRDQHFSSYHNNLTLSNIRASINNTTRLRIRNKN 313
           + STS  S +   + S+  N  TL  +  + +  TRLR+ NKN
Sbjct: 221 QASTSACSTLFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKN 263


>X95609-1|CAA64867.1|  312|Caenorhabditis elegans mec-8 protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 441 EPSTSKLSGMRDQHFSSYHNNLTLSNIRASINNTTRLRIRNKN 313
           + STS  S +   + S+  N  TL  +  + +  TRLR+ NKN
Sbjct: 221 QASTSACSTLFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKN 263


>X95608-1|CAA64866.1|  312|Caenorhabditis elegans mec-8 protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 441 EPSTSKLSGMRDQHFSSYHNNLTLSNIRASINNTTRLRIRNKN 313
           + STS  S +   + S+  N  TL  +  + +  TRLR+ NKN
Sbjct: 221 QASTSACSTLFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKN 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,824,760
Number of Sequences: 27780
Number of extensions: 202601
Number of successful extensions: 495
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)