Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312E04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    27   1.3  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    26   3.0  
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb...    25   6.8  
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    25   9.0  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    25   9.0  

>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
 Frame = -3

Query: 363 HVRPVSTVNEH-------ENWRFIREVGTENVQLLSGR*SVL---NLQFVWNVI 232
           H+  + TV+ H       +N RF+ E GTE++ L+ G   V    N Q+VW+ +
Sbjct: 61  HLNKLRTVHGHARNFVKADNSRFVDEKGTEHLDLIGGVGVVTVGNNNQYVWDCL 114


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 94  QGTVTMEFVDL-EREYTPVLWSNRLYTPEHRLNLHINLVTAESEIATNNVPHKLEI 258
           Q  V + F  L +  Y P+  S   Y P +     IN+  + + + ++ +PH +++
Sbjct: 256 QPDVPLTFAMLADGNYVPLPSSTNTYGPSNSYGYEININESTNHVDSSYLPHPIQL 311


>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 405

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 5   HAHDRPRLVYKQDWTFNFICFLTF 76
           H  D     Y +DWTF+F+ ++ F
Sbjct: 147 HELDWKSTPYPKDWTFDFLDYVLF 170


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +1

Query: 115 FVDLEREYTPVLWSNRLYTPEHRLNLHINLVTAESEIATNNVPHKLEIEYGSTPGQK 285
           F  +E EYTP+     L  P+ +     ++    ++   N++  +  + YG T G+K
Sbjct: 305 FDKVEEEYTPIKDERELIDPDQK-----DVFDLVNDNQFNDIMDEFLVSYGPTLGRK 356


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +2

Query: 26  LVYKQDWTFNFICFLTFE--YFERYRGR 103
           ++Y +D+T+NF  F T E  Y  R  G+
Sbjct: 135 IIYDRDFTYNFFGFKTLERSYLLRIDGK 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,355,360
Number of Sequences: 5004
Number of extensions: 53605
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)