Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312E04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0520 - 18121561-18121821,18122216-18122470,18122560-181227... 30 1.3
05_07_0228 - 28526885-28527046,28527151-28527241,28528315-285284... 30 1.3
09_04_0413 + 17372852-17373787 29 1.7
08_02_1628 + 28363476-28363517,28363624-28363791,28363863-283639... 28 4.0
08_02_1550 - 27818271-27818618,27818743-27818955,27819079-278195... 28 4.0
02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377... 28 5.2
11_02_0038 - 7631462-7634428,7635975-7636250 27 6.9
07_03_0472 - 18519169-18519285,18519561-18519671,18520689-185208... 27 6.9
03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,205... 27 6.9
12_02_1160 + 26592537-26593046,26593588-26593635 27 9.1
12_02_0979 - 25009721-25009975,25010058-25010127,25010216-250103... 27 9.1
09_04_0378 - 17091407-17092369 27 9.1
03_06_0095 - 31612293-31612607,31612982-31613119,31613229-316133... 27 9.1
>08_02_0520 -
18121561-18121821,18122216-18122470,18122560-18122731,
18122824-18123105,18123159-18123292,18123425-18123508,
18123611-18123901,18123982-18124314,18124620-18124750,
18124826-18124930,18125011-18125167,18125248-18125351,
18125442-18125602,18125800-18126116,18126369-18126650,
18127011-18127312,18127609-18127699,18127771-18127824,
18128110-18128186,18128279-18128438,18128545-18128629,
18129059-18129367,18129514-18129890
Length = 1507
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +2
Query: 284 SWTFSVPTSRMNLQFSCSFTVDTGRTCLVKYHVIQQNPSTPPALRQ*LLVMI 439
SW +++PT + + SC + T + Y+VI +P+ +Q LL+++
Sbjct: 647 SWAYTIPTWILKIPISC---FEVAITVFLSYYVIGFDPNVGRLFKQYLLLLL 695
>05_07_0228 -
28526885-28527046,28527151-28527241,28528315-28528455,
28528560-28528625,28529180-28529317,28529759-28529860,
28530156-28530236,28530314-28530383,28530598-28530674,
28531035-28531483
Length = 458
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 262 YGSTPGQKLDIF-GTDLPNESPILVFIHGGYW 354
YG P +LD++ D SP++ F+ GG W
Sbjct: 192 YGDQPRNRLDLYIPRDPKKPSPVVAFVTGGAW 223
>09_04_0413 + 17372852-17373787
Length = 311
Score = 29.5 bits (63), Expect = 1.7
Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 6/104 (5%)
Frame = +1
Query: 154 SNRLYTPEHRLNLHINLVTAESEIATNNVPHKLEIEYGSTPGQKLDIFGTDLPNES---P 324
S R+Y LH ++ A V K ++ + G + +F P+ S P
Sbjct: 15 SLRIYRSGKMDRLHHPVLAPAGVDAATGVTSK-DVVVDADTGLSVRVFLPARPDPSKKLP 73
Query: 325 ILVFIHGGYW---PDVSREISRYPAKSLYPAGVKTIIVGYDLCP 447
+LVF HGG + S Y A AGV + V Y L P
Sbjct: 74 VLVFFHGGAFVIESAFSTTYHGYAASLAAAAGVVAVSVEYRLAP 117
>08_02_1628 +
28363476-28363517,28363624-28363791,28363863-28363937,
28364018-28364070,28364559-28364709,28365079-28365261,
28366110-28366236,28366731-28366831,28367156-28367294,
28367359-28367420,28367702-28367754,28368266-28368290
Length = 392
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 254 SNLCGTLFVAISLSAVTRLMCKLRRC 177
S C V ++L+ V L C+LRRC
Sbjct: 353 SKFCSVKSVVVNLAVVYALACRLRRC 378
>08_02_1550 -
27818271-27818618,27818743-27818955,27819079-27819597,
27820239-27820357,27820457-27820763,27820840-27820922,
27821027-27821204,27821328-27821401,27822078-27822293,
27822724-27822757
Length = 696
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 265 GSTPGQKLDIFGTDLPNESPILVFIHGGYWPDVSREISRYPAKSL 399
G Q +G P++S VF HGGY+P + +P+ L
Sbjct: 336 GMQSPQHRPFYGFGTPSDSYGRVFSHGGYFPQATNYGGPFPSFGL 380
>02_05_1331 +
35736543-35736638,35737407-35737525,35737670-35737715,
35738117-35738172,35738452-35738547,35738844-35738961,
35739406-35739672,35740023-35740124,35740302-35740659,
35740750-35740863,35741045-35741676,35741895-35742103,
35742597-35742819,35743419-35743538,35743888-35743914,
35744281-35745045,35745431-35748511
Length = 2142
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -3
Query: 513 SVFEDVSRSVLYLIDDLSKRDRGTEII 433
S+F V + + YLI+++ + D+ TEII
Sbjct: 468 SLFRSVLKCIPYLIEEVGRNDKMTEII 494
>11_02_0038 - 7631462-7634428,7635975-7636250
Length = 1080
Score = 27.5 bits (58), Expect = 6.9
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +1
Query: 88 KIQGTVTME--FVDLEREYTPVLWSNRLYTPEHRLNLHINLVTAESEIATNNV--PHKLE 255
K+ T+ E FV L+ + +W+N + TP H LVTA E+ V H
Sbjct: 344 KLASTIKDESLFVVLDDVWQSEVWTNVVRTPFHDAAKATILVTARDELVVRRVGAEHLHR 403
Query: 256 IEYGST 273
+E ST
Sbjct: 404 VEMMST 409
>07_03_0472 -
18519169-18519285,18519561-18519671,18520689-18520816,
18520965-18521147,18521337-18521427
Length = 209
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 87 KDTGDGHHGICGFGKRIHTGAVVEPVIYPGASP-QLAHQP 203
K G +G CG + G VV +P ASP ++AH P
Sbjct: 50 KSQARGGNGACGRVDGSNVGIVVSQQFFPPASPCKVAHLP 89
>03_01_0265 +
2046918-2049102,2052385-2052452,2052542-2052652,
2053164-2053250,2053476-2053684,2054115-2054340,
2054473-2054510,2054657-2054714,2055363-2055662,
2055832-2055903,2055988-2056112,2056240-2056312,
2056417-2056521
Length = 1218
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 400 YPAGVKTIIVGYDLCPAVTLAEVVNQIQNAARYI 501
YP V +IV +DLC LAE +++N ++
Sbjct: 211 YPGKVYRVIVPFDLCTLEYLAEEWGKVRNRISWL 244
>12_02_1160 + 26592537-26593046,26593588-26593635
Length = 185
Score = 27.1 bits (57), Expect = 9.1
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 101 RSPWNLWIWKENTHR 145
R PW WIW + HR
Sbjct: 161 RQPWQRWIWVQVVHR 175
>12_02_0979 -
25009721-25009975,25010058-25010127,25010216-25010381,
25010501-25010651,25010843-25010890,25011172-25011225,
25011400-25011513,25012666-25012782,25012899-25012991,
25013085-25013123,25013990-25014055
Length = 390
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = -1
Query: 251 NLCGTLFVAISLSAVTRLMCKLRRCSGVYNRFDHSTGVYSLSKSTNSMVTVPCIFQS 81
++CG+ VAI L V +C+L +C Y T + + K + + VP IF S
Sbjct: 188 SICGSHSVAIPLVLVFPYLCRLFQCLRQYKDTKEKTCLLNALKYSTA---VPVIFLS 241
>09_04_0378 - 17091407-17092369
Length = 320
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +1
Query: 322 PILVFIHGGYWPDVSRE---ISRYPAKSLYPAGVKTIIVGYDLCP 447
PIL+F H GY+ S + RY + A V + V Y L P
Sbjct: 77 PILLFFHAGYFVVGSASWPPVHRYTNSVVASARVVAVAVNYRLAP 121
>03_06_0095 -
31612293-31612607,31612982-31613119,31613229-31613315,
31613410-31613469,31613563-31613662,31613757-31614163,
31614335-31614805,31614910-31615032,31615396-31615479,
31615609-31615678,31615767-31615846
Length = 644
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 176 SGVYNRFDHSTGVYSLSKSTNSMVTVPCIFQSTQRLKNI 60
S + N F H G+ S N+MV VP I + ++RLK +
Sbjct: 367 SRLINPF-HVEGLKEFSGPYNTMVEVPLICRDSRRLKEV 404
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,500,598
Number of Sequences: 37544
Number of extensions: 359830
Number of successful extensions: 937
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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