Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312E04f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    29   0.038
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   1.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   1.4  
AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.        23   1.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   2.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   4.4  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 28.7 bits (61), Expect = 0.038
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +1

Query: 142 PVLWSNRLYTPEHRLNLHINLVTAESEIATNNVPHKLEIEYGSTPGQKLDIFGTD 306
           PV+WSN L T EH  ++ I  +    ++    V   L +E+     ++ D F  D
Sbjct: 473 PVIWSNDLAT-EHDRSVMIQAIRVVQKLVNTTVMRDLGVEFQKIELKQCDEFVED 526


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 239 TLFVAISLSAVTRLMC 192
           TL VAISLSA   L+C
Sbjct: 739 TLCVAISLSATVTLVC 754


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 239 TLFVAISLSAVTRLMC 192
           TL VAISLSA   L+C
Sbjct: 829 TLCVAISLSATVTLVC 844


>AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.
          Length = 62

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/50 (20%), Positives = 19/50 (38%)
 Frame = +1

Query: 286 LDIFGTDLPNESPILVFIHGGYWPDVSREISRYPAKSLYPAGVKTIIVGY 435
           LD++   L    P++ ++H G +   +          L P  V  +   Y
Sbjct: 7   LDVYTNSLDQSKPVMFYVHEGAFISGTSSFHEMRPDYLLPKDVVVVSSNY 56


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 153 PQHRCVFSFQIHKFHGDRPLYLSKYSKV 70
           PQH       I+K +G  P  + KYS++
Sbjct: 383 PQHLIHPGKDINKLYGMTPSDIDKYSRI 410


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 153 PQHRCVFSFQIHKFHGDRPLYLSKYSKV 70
           PQH       I+K +G  P  + KYS++
Sbjct: 383 PQHLIHPGKDINKLYGMTPSDIDKYSRI 410


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 153 PQHRCVFSFQIHKFHGDRPLYLSKYSKV 70
           PQH       I+K +G  P  + KYS++
Sbjct: 321 PQHLIHPGKDINKLYGMTPSDIDKYSRI 348


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 331 RELEIHSGGRYRKCPASVRALIRT 260
           R + IH+G R  KC    +  I++
Sbjct: 165 RHMRIHTGERPHKCTVCSKTFIQS 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,398
Number of Sequences: 438
Number of extensions: 3750
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)