Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312E03f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c... 27 1.3
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz... 26 3.0
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 26 3.0
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 26 3.9
SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|... 26 3.9
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 26 3.9
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 25 5.2
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit... 25 6.8
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 6.8
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 25 9.0
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 25 9.0
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 9.0
>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
3|||Manual
Length = 197
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 178 KDQDGTLISLLEKMVKTAPASDVFFLQFECDPPVEKRVTLPIGDWALCG 324
KD + SLL ++ S VFF + C P+EK I + L G
Sbjct: 78 KDLHPNIYSLLRLLIAVLAVSVVFFTAWGCVNPLEKSTFGKIAFFVLIG 126
>SPCC1259.09c |||pyruvate dehydrogenase protein x
component|Schizosaccharomyces pombe|chr 3|||Manual
Length = 456
Score = 26.2 bits (55), Expect = 3.0
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 15/132 (11%)
Frame = +1
Query: 61 PALGPPG----GDVWADCAPISPA---------RRKYLLSFQGLQPPPKGLDKDQDGTLI 201
PA GP G GDV A I R +L F G++P +D
Sbjct: 189 PATGPHGRLLKGDVLAHVGKIDKGVPSSLQKFVRNLEVLDFSGVEPKKPSYTEDSVPVRK 248
Query: 202 SLLEKMVKTAPASDVFFLQFECDPPVEKRVTL--PIGDWALCGTDRSRRAVLRDSTFVLI 375
S + + +KT P D ++ FE +EK +L + G D A++ D+ +
Sbjct: 249 STMIETLKTVPMKDE-YITFERSISLEKLKSLLAKRKEKDAFGIDEVVSAMIGDALSISE 307
Query: 376 LAPADRNYVTTA 411
L+ + N + +A
Sbjct: 308 LSKVEPNSIESA 319
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 323 ERIDRGVPYCVIPLLYSYLRLLIGITLQQLYYRLDCMKRS 442
+ +D+ VIPL +L L +G+T Q L +++ ++ S
Sbjct: 29 KELDQPTSKAVIPLYEEFLDLFMGLTRQNLEEKVNSLQDS 68
>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
3|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 178 KDQDGTLISLLEKMVKTAPASDVFFLQFECDPPVEKRV 291
KD + SLL ++ VFF + C P+EK +
Sbjct: 77 KDSHPNIYSLLRLLISVLAVIVVFFTAWVCVNPLEKSI 114
>SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|chr
3|||Manual
Length = 258
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 178 KDQDGTLISLLEKMVKTAPASDVFFLQFECDPPVEKRV 291
KD + LL ++ S VFF + C P+EK +
Sbjct: 78 KDSHPNIYFLLRLLISVLAVSVVFFTAWVCVNPLEKSI 115
>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
3|||Manual
Length = 402
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 178 KDQDGTLISLLEKMVKTAPASDVFFLQFECDPPVEKRV 291
KD + LL ++ S VFF + C P+EK +
Sbjct: 78 KDSHPNIYFLLRLLISVLAVSVVFFTAWVCVNPLEKSI 115
>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
repair protein Sfr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 25.4 bits (53), Expect = 5.2
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = -2
Query: 400 RNSDQQAQV*VQKWNHAIRHASIYPFHKAPNRLSAKLRVSPLEDHIRTAEKKHQTLVLFS 221
+N D+ Q +QKW +A + A+ F R+ V+ I E K Q + +
Sbjct: 212 KNEDKDLQTLIQKWKNAAQQAAEVLFKPMAERIRLAGGVTQ-SFRIEEGENKGQIQEVRT 270
Query: 220 PFFLAM 203
F ++M
Sbjct: 271 EFTMSM 276
>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -3
Query: 318 KRPIAYRQSYAFLHWRITFELQKKNIRRWCCFHHFF*Q*YQRSILILV 175
K I Y ++Y + +I LQK +R FH+ Q Q ++L LV
Sbjct: 209 KNIIPYYRAYKQIPLKIFKRLQKNYVRMLIPFHYPTYQRIQSAVLTLV 256
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 106 PISPARRKY-LLSFQGLQPPPKGLDKDQDGTLISLLEKMVKTAPASDVFFLQFECD 270
P+ + K+ L+S PPP + D + +I+L EK P+S + D
Sbjct: 1721 PLYTSLEKHNLISRSPSSPPPIHTNFDTNADIITLFEKEANEHPSSIALHFVYNVD 1776
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +1
Query: 58 PPALGPPGGDVWADCAPISPARRK 129
PP PP D W D +PA K
Sbjct: 308 PPPPPPPSNDFWKDSNEPAPADNK 331
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 184 QDGTLISLLEKMVKTAPAS-DVFFLQFECDPPVEKRVTLPIGD 309
++ ++S L + PAS D+FFLQ PP R +GD
Sbjct: 338 KENVVLSRLYAHKRGKPASADMFFLQNIAVPPTRFRPASKMGD 380
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +3
Query: 93 GRLCAYISRKKKVLAQFSGFTTTA*RIR---QGSRWNVDIIARKNGEN 227
GRL + +SR AQ GFT +R QG W ++ +NG++
Sbjct: 822 GRLLSVLSRLFTAYAQMRGFTCRMDDLRLDEQGDNWRRQLL--ENGKS 867
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = -1
Query: 119 AGDIGAQSAQTSPPGGPSAGG-VITSKPGL 33
AG A PP GP AG I+ PG+
Sbjct: 1893 AGPPSAAPTSALPPAGPPAGATAISGNPGM 1922
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,313,769
Number of Sequences: 5004
Number of extensions: 48494
Number of successful extensions: 117
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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