Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312E03f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57249| Best HMM Match : No HMM Matches (HMM E-Value=.) 95 2e-20
SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.062
SB_31787| Best HMM Match : Exostosin (HMM E-Value=8.8e-07) 34 0.062
SB_47335| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_39414| Best HMM Match : rve (HMM E-Value=0.0011) 31 0.76
SB_32182| Best HMM Match : Ribosomal_L14 (HMM E-Value=3) 30 1.3
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_9861| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33) 29 1.8
SB_24286| Best HMM Match : DUF1368 (HMM E-Value=4.1) 29 2.3
SB_17140| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_35734| Best HMM Match : Extensin_2 (HMM E-Value=0.52) 29 3.1
SB_32387| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_52151| Best HMM Match : TPR_1 (HMM E-Value=0) 27 7.1
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_36660| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_11116| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_4354| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_20622| Best HMM Match : zf-CHC2 (HMM E-Value=0.64) 27 9.4
SB_11868| Best HMM Match : zf-CHC2 (HMM E-Value=0.64) 27 9.4
SB_59216| Best HMM Match : DUF1540 (HMM E-Value=0.25) 27 9.4
SB_45658| Best HMM Match : Sushi (HMM E-Value=0) 27 9.4
>SB_57249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 503
Score = 95.5 bits (227), Expect = 2e-20
Identities = 62/173 (35%), Positives = 90/173 (52%), Gaps = 1/173 (0%)
Frame = +1
Query: 1 LAQSTFTHN-HFRPGFDVITPPALGPPGGDVWADCAPISPARRKYLLSFQGLQPPPKGLD 177
LA ST+ + H+R GFDVI PP +GP G+VWA P RKY L+F+G
Sbjct: 6 LATSTYLPDVHYRIGFDVIVPPLIGPTSGEVWAQAGQQLPTLRKYFLTFEG------SFH 59
Query: 178 KDQDGTLISLLEKMVKTAPASDVFFLQFECDPPVEKRVTLPIGDWALCGTDRSRRAVLRD 357
+G + +V + S F+ EC +++ G W LCG+ ++R L+
Sbjct: 60 LSNEGAEEVSKDDLVFLSKESSDLFIAVEC--VTYDKISNSAG-WNLCGSHKNRTVRLKK 116
Query: 358 STFVLILAPADRNYVTTALLQARLYEALRSGAIPVVLGGDRIRLPYEEVLDWK 516
STF L+ + +VT RL EAL++GAIPV+LG + LP E +DW+
Sbjct: 117 STFSLV-PVGNSGFVT----HVRLIEALQTGAIPVILGTTNM-LPLAEFIDWR 163
>SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 462
Score = 34.3 bits (75), Expect = 0.062
Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 11/184 (5%)
Frame = +1
Query: 1 LAQSTFTHNHFRPGFDVITP--PALGPPG--GDVWADCAPISPARRKYLLSFQGLQPPPK 168
L +++ + + RPGFDV P P P G++ C+ P RKY L+F+G +
Sbjct: 203 LVKASLSSDLIRPGFDVSLPLFPKTHPHKDLGNLPHSCSAF-PLERKYKLAFKGKRYL-N 260
Query: 169 GLDKDQDGTLISLLEK----MVKTAPASDVFFLQFE--CDPPVEKRVTLPIGDWALCGTD 330
G+ + L + ++ T + + CD GD AL D
Sbjct: 261 GIGSESRNALYHIHNGRDIVLLTTCKHGKAWHKHKDERCD-----------GDNALY--D 307
Query: 331 R-SRRAVLRDSTFVLILAPADRNYVTTALLQARLYEALRSGAIPVVLGGDRIRLPYEEVL 507
R S +L ++TF L+ P R L R E+L+ G IP +L D LP+ EV+
Sbjct: 308 RYSYDELLLNATFCLV--PRGRR-----LGSFRFLESLKVGCIPFLLS-DGWELPFAEVI 359
Query: 508 DWKR 519
DWK+
Sbjct: 360 DWKK 363
>SB_31787| Best HMM Match : Exostosin (HMM E-Value=8.8e-07)
Length = 497
Score = 34.3 bits (75), Expect = 0.062
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 415 LQARLYEALRSGAIPVVLGGDRIRLPYEEVLDWKR 519
+ + Y G IP+V+ D + LP+ EVLDWKR
Sbjct: 201 MSTQTYRPGFDGCIPIVVSDDYV-LPFSEVLDWKR 234
>SB_47335| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 33.5 bits (73), Expect = 0.11
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 232 PASDVFFLQFECDPPVEKRVTLPIGDWALCGTDRSRRAVLRDST 363
P +D + +QFE DP ++ L GDW+ C R R++T
Sbjct: 24 PLTDKYLVQFETDPTKHVKI-LARGDWSTCSASCGRGVQTRNNT 66
>SB_39414| Best HMM Match : rve (HMM E-Value=0.0011)
Length = 269
Score = 30.7 bits (66), Expect = 0.76
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 268 DPPVEKRVT-LPIGDWALCGTDRSRRAVLRDSTFVLILAPADRNYVTTALLQA 423
DPPV T +P G W C TD +L D +V+++ Y A+L++
Sbjct: 22 DPPVPIVTTEMPKGPWQFCSTD--LLGLLPDGRYVIVIIDYFSRYFEAAMLRS 72
>SB_32182| Best HMM Match : Ribosomal_L14 (HMM E-Value=3)
Length = 294
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 268 DPPVEKRVT-LPIGDWALCGTDRSRRAVLRDSTFVLILAPADRNYVTTALLQA 423
DPPV T +P G W C TD L D +V+++ Y A+L++
Sbjct: 210 DPPVPIVTTEMPKGPWQFCSTD--LLGPLSDGRYVIVIIDYFSRYFEAAMLRS 260
>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 268 DPPVEKRVT-LPIGDWALCGTDRSRRAVLRDSTFVLILAPADRNYVTTALLQA 423
DPPV T +P G W C TD L D +V+++ Y A+L++
Sbjct: 696 DPPVPIVTTEMPKGPWQFCSTD--LLGPLPDGRYVIVIIDYFSRYFEAAMLRS 746
>SB_9861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 29.5 bits (63), Expect = 1.8
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 424 RLYEALRSGAIPVVLGGDRI 483
RLY +L SG++PV +G D++
Sbjct: 230 RLYHSLTSGSVPVYMGSDKV 249
>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
Length = 735
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 268 DPPVEKRVT-LPIGDWALCGTDRSRRAVLRDSTFVLILAPADRNYVTTALLQA 423
DPPV T +P G W C TD L D +V+++ Y A+L++
Sbjct: 417 DPPVPIVTTEMPKGPWQFCSTD--LLGPLPDGRYVIVIIDYFSRYFEAAMLRS 467
>SB_24286| Best HMM Match : DUF1368 (HMM E-Value=4.1)
Length = 436
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 151 LQPPPKGLDKDQDGTLISLLEKMVK 225
L PPP +KDQDG I L+K V+
Sbjct: 128 LTPPPSSEEKDQDGGTIMELQKHVE 152
>SB_17140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1236
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -1
Query: 389 SAGASMSTKVESRNTARLDLSVPQSAQSPIGKVTRFSTGGSHSNCRKKTSDAGAV 225
SAG + T +RN S+ + +TR TGG+ S RKKT A ++
Sbjct: 994 SAGTTPRTPSLTRNQTGGAPSLTRKQTGGAASLTRKQTGGAASMTRKKTGGAASM 1048
>SB_35734| Best HMM Match : Extensin_2 (HMM E-Value=0.52)
Length = 460
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 37 PGFDVITPPALGPPGGDVWADCAPI 111
PG V PA+ PP D+ A+C P+
Sbjct: 179 PGHSVPRRPAIRPPNSDLRANCGPM 203
>SB_32387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 912
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 318 KRPIAYRQSYAFLHWRITFELQKKNIRRWCCFHHF 214
KRPIA+ Y W ++ K+ I CC H+
Sbjct: 877 KRPIAHSTVYEDSEWVFHYDKGKQTIGDECCERHY 911
>SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = -2
Query: 325 FHKAPNRLSAKLRVSPLEDHIRTAEKKHQTLV----LFSPFFLAMIST 194
F + PN P E RTA KK + ++ +F PF L + S+
Sbjct: 19 FRQTPNSKVLNKSTDPFEIQTRTARKKKRKIIAHIFIFQPFLLIVYSS 66
>SB_52151| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 1137
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 328 PFHKAPNRLSAKLRVSPLEDHIRTAE 251
P H P + +L +SP+EDHI E
Sbjct: 836 PIHHDPLEVLYRLLISPIEDHITEPE 861
>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2408
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -2
Query: 328 PFHKAPNRLSAKLRVSPLEDHIRTAEKKHQTLVLFSPFFLAMIS 197
P + P S + R +PL+ R ++T V+F P+ ++S
Sbjct: 1585 PLTRKPQSASRRWRSTPLDRMYRIFVGLYRTFVIFEPYICRIVS 1628
>SB_36660| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1021
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 61 PALGPPGGDVWADCAPIS 114
PA+ PPGG V+ D P+S
Sbjct: 393 PAMSPPGGIVFQDSTPLS 410
>SB_11116| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1661
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 343 HASIYPFHKAPNRLSAKLRVSPLEDHIRTAE 251
H P H P + +L +SP+EDH+ E
Sbjct: 1406 HGPETPIHHDPLEVLYRLLISPIEDHLTEPE 1436
>SB_4354| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 112 SPARRKYLLSFQGLQPPPKG 171
SP RR+ LLS PPPKG
Sbjct: 72 SPHRREPLLSTSNFTPPPKG 91
>SB_20622| Best HMM Match : zf-CHC2 (HMM E-Value=0.64)
Length = 276
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/62 (29%), Positives = 23/62 (37%)
Frame = +1
Query: 22 HNHFRPGFDVITPPALGPPGGDVWADCAPISPARRKYLLSFQGLQPPPKGLDKDQDGTLI 201
H G V PP L PP P P+ LL + + PK DQ ++
Sbjct: 52 HQLLMVGPTVPIPPTLPPPPPPPPPPLPPPPPSGGNILLQKKSMTTKPKSQPVDQAAPMV 111
Query: 202 SL 207
SL
Sbjct: 112 SL 113
>SB_11868| Best HMM Match : zf-CHC2 (HMM E-Value=0.64)
Length = 500
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/62 (29%), Positives = 23/62 (37%)
Frame = +1
Query: 22 HNHFRPGFDVITPPALGPPGGDVWADCAPISPARRKYLLSFQGLQPPPKGLDKDQDGTLI 201
H G V PP L PP P P+ LL + + PK DQ ++
Sbjct: 276 HQLLMVGPTVPIPPTLPPPPPPPPPPLPPPPPSGGNILLQKKSMTTKPKSQPVDQAAPMV 335
Query: 202 SL 207
SL
Sbjct: 336 SL 337
>SB_59216| Best HMM Match : DUF1540 (HMM E-Value=0.25)
Length = 230
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 61 PALGPPGGDVWADCAPIS 114
PA+ PPGG V+ D P+S
Sbjct: 169 PAMSPPGGIVFQDSIPLS 186
>SB_45658| Best HMM Match : Sushi (HMM E-Value=0)
Length = 875
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
Frame = +1
Query: 250 FLQFECDPPV-----EKRVTLPIGDWAL 318
FL F CDP EKRV +P G W++
Sbjct: 238 FLTFRCDPRYSLHGSEKRVCMPSGRWSV 265
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,931,808
Number of Sequences: 59808
Number of extensions: 384674
Number of successful extensions: 1162
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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